RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 NISCHQ9Y2I1 1504 aa24.4■■□□□ 1.5
CHMP3-201ENST00000263856 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
CHMP3-201ENST00000263856 SUPT5HO00267 1087 aaKnown RBP21.46■■□□□ 1.03
CHMP3-201ENST00000263856 DCAF8L2P0C7V8 631 aa21.06■□□□□ 0.96
CHMP3-201ENST00000263856 CHIC1Q5VXU3 224 aa20.64■□□□□ 0.89
CHMP3-201ENST00000263856 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
CHMP3-201ENST00000263856 MYO15BQ96JP2 1530 aa20.61■□□□□ 0.89
CHMP3-201ENST00000263856 PCGF6Q9BYE7 350 aa20.6■□□□□ 0.89
CHMP3-201ENST00000263856 HRCP23327 699 aa20.49■□□□□ 0.87
CHMP3-201ENST00000263856 PPARGC1BQ86YN6 1023 aaKnown RBP20.36■□□□□ 0.85
CHMP3-201ENST00000263856 CCDC180Q9P1Z9 1646 aa20.35■□□□□ 0.85
CHMP3-201ENST00000263856 LOC105371045A0A1W2PR82 267 aa20.31■□□□□ 0.84
CHMP3-201ENST00000263856 EHMT2Q96KQ7 1210 aa20.05■□□□□ 0.8
CHMP3-201ENST00000263856 FAM9AQ8IZU1 332 aaPredicted RBP19.95■□□□□ 0.78
CHMP3-201ENST00000263856 DCAF1Q9Y4B6 1507 aa19.85■□□□□ 0.77
CHMP3-201ENST00000263856 TRIM26Q12899 539 aaPredicted RBP19.84■□□□□ 0.77
CHMP3-201ENST00000263856 TRIM41Q8WV44 630 aa19.77■□□□□ 0.76
CHMP3-201ENST00000263856 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
CHMP3-201ENST00000263856 RSF1Q96T23 1441 aaPredicted RBP19.52■□□□□ 0.72
CHMP3-201ENST00000263856 ABCC9O60706 1549 aa19.52■□□□□ 0.72
CHMP3-201ENST00000263856 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
CHMP3-201ENST00000263856 ZEB1P37275 1124 aaPredicted RBP19.44■□□□□ 0.7
CHMP3-201ENST00000263856 TTBK1Q5TCY1 1321 aaPredicted RBP19.43■□□□□ 0.7
CHMP3-201ENST00000263856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.28■□□□□ 0.68
CHMP3-201ENST00000263856 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
CHMP3-201ENST00000263856 CCER1Q8TC90 406 aaPredicted RBP19.22■□□□□ 0.67
CHMP3-201ENST00000263856 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
CHMP3-201ENST00000263856 MROH2BQ7Z745 1585 aa19.12■□□□□ 0.65
CHMP3-201ENST00000263856 WIZO95785 1651 aa19.07■□□□□ 0.64
CHMP3-201ENST00000263856 UBTFP17480 764 aaKnown RBP18.92■□□□□ 0.62
CHMP3-201ENST00000263856 DIEXFQ68CQ4 756 aaKnown RBP18.9■□□□□ 0.62
CHMP3-201ENST00000263856 NEUROD1Q13562 356 aa18.89■□□□□ 0.62
CHMP3-201ENST00000263856 PELP1Q8IZL8 1130 aaKnown RBP18.88■□□□□ 0.61
CHMP3-201ENST00000263856 NACADO15069 1562 aa18.87■□□□□ 0.61
CHMP3-201ENST00000263856 ABCC8Q09428 1581 aa18.87■□□□□ 0.61
CHMP3-201ENST00000263856 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
CHMP3-201ENST00000263856 RANGAP1P46060 587 aaPredicted RBP18.82■□□□□ 0.6
CHMP3-201ENST00000263856 YTHDC1Q96MU7 727 aaKnown RBP18.81■□□□□ 0.6
CHMP3-201ENST00000263856 CCDC88BA6NC98 1476 aa18.8■□□□□ 0.6
CHMP3-201ENST00000263856 GTF3C3Q9Y5Q9 886 aa18.79■□□□□ 0.6
CHMP3-201ENST00000263856 CENPBP07199 599 aaPredicted RBP18.76■□□□□ 0.59
CHMP3-201ENST00000263856 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
CHMP3-201ENST00000263856 SOGA1O94964 1423 aa18.75■□□□□ 0.59
CHMP3-201ENST00000263856 CEP162Q5TB80 1403 aa18.75■□□□□ 0.59
CHMP3-201ENST00000263856 HNRNPUL2Q1KMD3 747 aaKnown RBP18.73■□□□□ 0.59
CHMP3-201ENST00000263856 PABPN1Q86U42 306 aaKnown RBP eCLIP18.68■□□□□ 0.58
CHMP3-201ENST00000263856 CSRNP3Q8WYN3 585 aa18.68■□□□□ 0.58
CHMP3-201ENST00000263856 RUSC2Q8N2Y8 1516 aa18.65■□□□□ 0.58
CHMP3-201ENST00000263856 EIF4G1Q04637 1599 aaKnown RBP18.59■□□□□ 0.57
CHMP3-201ENST00000263856 ZNF316A6NFI3 1004 aaPredicted RBP18.58■□□□□ 0.57
CHMP3-201ENST00000263856 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
CHMP3-201ENST00000263856 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
CHMP3-201ENST00000263856 SMARCA2P51531 1590 aa18.54■□□□□ 0.56
CHMP3-201ENST00000263856 APLP2Q06481 763 aa18.53■□□□□ 0.56
CHMP3-201ENST00000263856 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
CHMP3-201ENST00000263856 WRNQ14191 1432 aaPredicted RBP eCLIP18.52■□□□□ 0.56
CHMP3-201ENST00000263856 MIER1Q8N108 512 aa18.46■□□□□ 0.55
CHMP3-201ENST00000263856 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
CHMP3-201ENST00000263856 EEA1Q15075 1411 aa18.38■□□□□ 0.53
CHMP3-201ENST00000263856 CLIP1P30622 1438 aa18.36■□□□□ 0.53
CHMP3-201ENST00000263856 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.53
CHMP3-201ENST00000263856 CEP164Q9UPV0 1460 aa18.28■□□□□ 0.52
CHMP3-201ENST00000263856 ITGAEP38570 1179 aa18.27■□□□□ 0.51
CHMP3-201ENST00000263856 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
CHMP3-201ENST00000263856 RAPGEF2Q9Y4G8 1499 aa18.22■□□□□ 0.51
CHMP3-201ENST00000263856 VPS8Q8N3P4 1428 aa18.2■□□□□ 0.5
CHMP3-201ENST00000263856 BAZ1BQ9UIG0 1483 aaKnown RBP18.12■□□□□ 0.49
CHMP3-201ENST00000263856 KANK4Q5T7N3 995 aaPredicted RBP18.11■□□□□ 0.49
CHMP3-201ENST00000263856 KIF21BO75037 1637 aa18.1■□□□□ 0.49
CHMP3-201ENST00000263856 BICRAQ9NZM4 1560 aa18.07■□□□□ 0.48
CHMP3-201ENST00000263856 ATAD2BQ9ULI0 1458 aa18.04■□□□□ 0.48
CHMP3-201ENST00000263856 DHX57Q6P158 1386 aaKnown RBP18■□□□□ 0.47
CHMP3-201ENST00000263856 ATP1B4Q9UN42 357 aaPredicted RBP18■□□□□ 0.47
CHMP3-201ENST00000263856 BCANQ96GW7 911 aa17.92■□□□□ 0.46
CHMP3-201ENST00000263856 MYT1Q01538 1121 aa17.92■□□□□ 0.46
CHMP3-201ENST00000263856 SUPT16HQ9Y5B9 1047 aaKnown RBP17.91■□□□□ 0.46
CHMP3-201ENST00000263856 KCNH8Q96L42 1107 aa17.9■□□□□ 0.46
CHMP3-201ENST00000263856 PEG3Q9GZU2 1588 aa17.9■□□□□ 0.46
CHMP3-201ENST00000263856 ARAP1Q96P48 1450 aa17.9■□□□□ 0.46
CHMP3-201ENST00000263856 P3H3Q8IVL6 736 aa17.88■□□□□ 0.45
CHMP3-201ENST00000263856 FAM50AQ14320 339 aaKnown RBP17.87■□□□□ 0.45
CHMP3-201ENST00000263856 TOP2BQ02880 1626 aa17.86■□□□□ 0.45
CHMP3-201ENST00000263856 HIRIP3Q9BW71 556 aaPredicted RBP17.85■□□□□ 0.45
CHMP3-201ENST00000263856 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
CHMP3-201ENST00000263856 CCNB3Q8WWL7 1395 aa17.83■□□□□ 0.44
CHMP3-201ENST00000263856 DDX10Q13206 875 aaKnown RBP17.81■□□□□ 0.44
CHMP3-201ENST00000263856 KIF27Q86VH2 1401 aa17.8■□□□□ 0.44
CHMP3-201ENST00000263856 SIN3AQ96ST3 1273 aa17.79■□□□□ 0.44
CHMP3-201ENST00000263856 PRXQ9BXM0 1461 aa17.79■□□□□ 0.44
CHMP3-201ENST00000263856 RAB3GAP2Q9H2M9 1393 aa17.76■□□□□ 0.43
CHMP3-201ENST00000263856 CUX1P39880 1505 aa17.74■□□□□ 0.43
CHMP3-201ENST00000263856 ERICH3Q5RHP9 1530 aa17.74■□□□□ 0.43
CHMP3-201ENST00000263856 RRBP1Q9P2E9 1410 aaKnown RBP17.72■□□□□ 0.43
CHMP3-201ENST00000263856 ARHGAP35Q9NRY4 1499 aa17.72■□□□□ 0.43
CHMP3-201ENST00000263856 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
CHMP3-201ENST00000263856 FKBP8Q14318 412 aa17.7■□□□□ 0.42
CHMP3-201ENST00000263856 CUX2O14529 1486 aa17.68■□□□□ 0.42
CHMP3-201ENST00000263856 TRIM52Q96A61 297 aa17.68■□□□□ 0.42
CHMP3-201ENST00000263856 TSHZ2Q9NRE2 1034 aa17.67■□□□□ 0.42
CHMP3-201ENST00000263856 SETD5Q9C0A6 1442 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms