Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.66■□□□□ 0.9
VCPP55072 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VCPP55072 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.65■□□□□ 0.9
VCPP55072 AC116562.4-201ENST00000641316 2276 ntBASIC20.65■□□□□ 0.9
VCPP55072 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.65■□□□□ 0.9
VCPP55072 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.65■□□□□ 0.9
VCPP55072 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 CRYGFP-201ENST00000418459 633 ntBASIC20.65■□□□□ 0.9
VCPP55072 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.65■□□□□ 0.9
VCPP55072 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.65■□□□□ 0.9
VCPP55072 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VCPP55072 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.65■□□□□ 0.9
VCPP55072 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.65■□□□□ 0.9
VCPP55072 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VCPP55072 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.65■□□□□ 0.9
VCPP55072 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VCPP55072 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VCPP55072 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCPP55072 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
VCPP55072 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VCPP55072 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.64■□□□□ 0.89
VCPP55072 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VCPP55072 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.64■□□□□ 0.89
VCPP55072 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.64■□□□□ 0.89
VCPP55072 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.64■□□□□ 0.89
VCPP55072 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
VCPP55072 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.64■□□□□ 0.89
VCPP55072 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
VCPP55072 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.64■□□□□ 0.89
VCPP55072 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VCPP55072 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.64■□□□□ 0.89
VCPP55072 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.64■□□□□ 0.89
VCPP55072 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VCPP55072 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.63■□□□□ 0.89
VCPP55072 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
VCPP55072 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.63■□□□□ 0.89
VCPP55072 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.63■□□□□ 0.89
VCPP55072 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCPP55072 NBPF21P-201ENST00000425093 1451 ntBASIC20.62■□□□□ 0.89
VCPP55072 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VCPP55072 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VCPP55072 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.62■□□□□ 0.89
VCPP55072 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.62■□□□□ 0.89
VCPP55072 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
VCPP55072 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
VCPP55072 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.62■□□□□ 0.89
VCPP55072 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCPP55072 KRT8P20-201ENST00000423953 1409 ntBASIC20.61■□□□□ 0.89
VCPP55072 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.61■□□□□ 0.89
VCPP55072 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.61■□□□□ 0.89
VCPP55072 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 HLA-G-202ENST00000376815 851 ntBASIC20.61■□□□□ 0.89
VCPP55072 HLA-G-203ENST00000376818 1127 ntBASIC20.61■□□□□ 0.89
VCPP55072 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.61■□□□□ 0.89
VCPP55072 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
VCPP55072 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.61■□□□□ 0.89
VCPP55072 KRT18P48-201ENST00000434763 852 ntBASIC20.61■□□□□ 0.89
VCPP55072 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCPP55072 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.61■□□□□ 0.89
VCPP55072 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms