Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.99■□□□□ 0.31
SOX2P48431 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.99■□□□□ 0.31
SOX2P48431 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 AC006333.2-201ENST00000607957 2099 ntBASIC16.99■□□□□ 0.31
SOX2P48431 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.99■□□□□ 0.31
SOX2P48431 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SOX2P48431 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.99■□□□□ 0.31
SOX2P48431 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
SOX2P48431 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 AC010980.2-201ENST00000587099 1412 ntBASIC16.98■□□□□ 0.31
SOX2P48431 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SOX2P48431 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.98■□□□□ 0.31
SOX2P48431 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.98■□□□□ 0.31
SOX2P48431 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.98■□□□□ 0.31
SOX2P48431 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SOX2P48431 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 AC141586.3-201ENST00000562166 1838 ntBASIC16.98■□□□□ 0.31
SOX2P48431 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SOX2P48431 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.98■□□□□ 0.31
SOX2P48431 AC116351.2-201ENST00000606540 1585 ntBASIC16.98■□□□□ 0.31
SOX2P48431 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SOX2P48431 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SOX2P48431 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SOX2P48431 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX2P48431 KRT18P5-201ENST00000436075 1291 ntBASIC16.97■□□□□ 0.31
SOX2P48431 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.97■□□□□ 0.31
SOX2P48431 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX2P48431 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX2P48431 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX2P48431 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.96■□□□□ 0.31
SOX2P48431 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.96■□□□□ 0.31
SOX2P48431 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX2P48431 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
SOX2P48431 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX2P48431 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX2P48431 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms