Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.39■□□□□ 0.7
VIMP08670 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.39■□□□□ 0.7
VIMP08670 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VIMP08670 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VIMP08670 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.39■□□□□ 0.69
VIMP08670 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.39■□□□□ 0.69
VIMP08670 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.39■□□□□ 0.69
VIMP08670 AL031963.3-201ENST00000606441 850 ntBASIC19.39■□□□□ 0.69
VIMP08670 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VIMP08670 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.39■□□□□ 0.69
VIMP08670 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.39■□□□□ 0.69
VIMP08670 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VIMP08670 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.39■□□□□ 0.69
VIMP08670 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
VIMP08670 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.38■□□□□ 0.69
VIMP08670 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.38■□□□□ 0.69
VIMP08670 AC097381.1-201ENST00000429019 1296 ntBASIC19.38■□□□□ 0.69
VIMP08670 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.38■□□□□ 0.69
VIMP08670 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.38■□□□□ 0.69
VIMP08670 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.38■□□□□ 0.69
VIMP08670 AC093525.10-201ENST00000625130 1569 ntBASIC19.38■□□□□ 0.69
VIMP08670 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VIMP08670 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VIMP08670 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
VIMP08670 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
VIMP08670 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.37■□□□□ 0.69
VIMP08670 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.37■□□□□ 0.69
VIMP08670 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
VIMP08670 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VIMP08670 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 KRT8P20-201ENST00000423953 1409 ntBASIC19.36■□□□□ 0.69
VIMP08670 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.36■□□□□ 0.69
VIMP08670 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VIMP08670 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.36■□□□□ 0.69
VIMP08670 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.36■□□□□ 0.69
VIMP08670 AP001160.3-201ENST00000601484 763 ntBASIC19.36■□□□□ 0.69
VIMP08670 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.36■□□□□ 0.69
VIMP08670 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.36■□□□□ 0.69
VIMP08670 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VIMP08670 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VIMP08670 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.36■□□□□ 0.69
VIMP08670 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.36■□□□□ 0.69
VIMP08670 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms