Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA2O43364 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA2O43364 PCED1CP-201ENST00000419887 785 ntBASIC20.68■□□□□ 0.9
HOXA2O43364 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA2O43364 AL359075.1-203ENST00000462729 1002 ntBASIC20.68■□□□□ 0.9
HOXA2O43364 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXA2O43364 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXA2O43364 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA2O43364 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXA2O43364 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXA2O43364 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
HOXA2O43364 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXA2O43364 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXA2O43364 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXA2O43364 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXA2O43364 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 FAM86EP-206ENST00000510506 987 ntBASIC20.67■□□□□ 0.9
HOXA2O43364 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXA2O43364 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXA2O43364 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXA2O43364 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXA2O43364 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXA2O43364 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXA2O43364 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA2O43364 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
HOXA2O43364 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.66■□□□□ 0.9
HOXA2O43364 IER3-202ENST00000376377 1350 ntBASIC20.66■□□□□ 0.9
HOXA2O43364 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXA2O43364 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HOXA2O43364 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXA2O43364 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXA2O43364 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXA2O43364 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.65■□□□□ 0.9
HOXA2O43364 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXA2O43364 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.65■□□□□ 0.9
HOXA2O43364 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXA2O43364 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXA2O43364 AC009947.2-201ENST00000444014 672 ntBASIC20.65■□□□□ 0.9
HOXA2O43364 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXA2O43364 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXA2O43364 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HOXA2O43364 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
HOXA2O43364 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXA2O43364 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXA2O43364 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.64■□□□□ 0.9
HOXA2O43364 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXA2O43364 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXA2O43364 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXA2O43364 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXA2O43364 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXA2O43364 TSPY21P-201ENST00000433481 731 ntBASIC20.64■□□□□ 0.89
HOXA2O43364 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXA2O43364 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXA2O43364 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXA2O43364 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXA2O43364 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXA2O43364 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXA2O43364 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXA2O43364 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXA2O43364 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HOXA2O43364 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms