Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM38O00635 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
TRIM38O00635 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.42■□□□□ 0.7
TRIM38O00635 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM38O00635 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.42■□□□□ 0.7
TRIM38O00635 AP000525.1-201ENST00000608286 694 ntBASIC19.42■□□□□ 0.7
TRIM38O00635 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM38O00635 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TRIM38O00635 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM38O00635 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM38O00635 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
TRIM38O00635 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM38O00635 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
TRIM38O00635 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TRIM38O00635 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM38O00635 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM38O00635 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM38O00635 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 MIR6786-201ENST00000616843 113 ntBASIC19.41■□□□□ 0.7
TRIM38O00635 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM38O00635 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM38O00635 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM38O00635 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM38O00635 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM38O00635 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM38O00635 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM38O00635 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM38O00635 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM38O00635 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM38O00635 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM38O00635 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM38O00635 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM38O00635 AC145285.6-201ENST00000604632 637 ntBASIC19.39■□□□□ 0.69
TRIM38O00635 AL445228.2-201ENST00000605589 952 ntBASIC19.39■□□□□ 0.69
TRIM38O00635 AL031963.3-201ENST00000606441 850 ntBASIC19.39■□□□□ 0.69
TRIM38O00635 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
TRIM38O00635 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM38O00635 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM38O00635 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 UNC93B2-201ENST00000285383 730 ntBASIC19.38■□□□□ 0.69
TRIM38O00635 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM38O00635 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM38O00635 MIR1238-201ENST00000408483 83 ntBASIC19.38■□□□□ 0.69
TRIM38O00635 KRT8P20-201ENST00000423953 1409 ntBASIC19.38■□□□□ 0.69
TRIM38O00635 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM38O00635 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM38O00635 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM38O00635 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.38■□□□□ 0.69
TRIM38O00635 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM38O00635 CR392000.1-201ENST00000624770 1228 ntBASIC19.38■□□□□ 0.69
TRIM38O00635 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM38O00635 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms