Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 AC007613.1-201ENST00000572811 2597 ntBASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CHMP1AQ9HD42 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 AC087623.3-201ENST00000607047 1098 ntBASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CHMP1AQ9HD42 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 AC068338.2-201ENST00000563278 1430 ntBASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 CROCCP1-201ENST00000426910 5675 ntBASIC16.61■□□□□ 0.25
CHMP1AQ9HD42 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CHMP1AQ9HD42 CYP2T1P-201ENST00000432607 1285 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms