Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 AC083880.1-201ENST00000608266 535 ntBASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM56Q9BRZ2 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 LINC01465-201ENST00000408887 1940 ntBASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 AL390719.1-204ENST00000412397 1219 ntBASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 AC073210.2-201ENST00000430369 194 ntBASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 RPS2P52-201ENST00000469610 820 ntBASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
TRIM56Q9BRZ2 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 AL109923.1-201ENST00000618799 583 ntBASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM56Q9BRZ2 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM56Q9BRZ2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 AC092368.3-202ENST00000574180 1591 ntBASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 TEX21P-204ENST00000641479 1693 ntBASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.66■□□□□ 0.74
TRIM56Q9BRZ2 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms