Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 AC098590.1-201ENST00000468126 897 ntBASIC14.97□□□□□ -0.01
CCDC140Q96MF4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 FAM197Y4-202ENST00000622692 608 ntBASIC14.97□□□□□ -0.01
CCDC140Q96MF4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC140Q96MF4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CCDC140Q96MF4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC140Q96MF4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC140Q96MF4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC140Q96MF4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC140Q96MF4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC140Q96MF4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms