Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 AC004264.1-201ENST00000608354 794 ntBASIC17.55■□□□□ 0.4
ATG4DQ86TL0 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4DQ86TL0 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 C1QL1P1-201ENST00000568105 661 ntBASIC17.54■□□□□ 0.4
ATG4DQ86TL0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 AL023875.1-201ENST00000640777 796 ntBASIC17.54■□□□□ 0.4
ATG4DQ86TL0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ATG4DQ86TL0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 LINC01465-201ENST00000408887 1940 ntBASIC17.53■□□□□ 0.4
ATG4DQ86TL0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 AC239809.2-201ENST00000415381 517 ntBASIC17.53■□□□□ 0.4
ATG4DQ86TL0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 RPPH1-201ENST00000516869 333 ntBASIC17.53■□□□□ 0.4
ATG4DQ86TL0 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4DQ86TL0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 KRASP1-201ENST00000407852 552 ntBASIC17.52■□□□□ 0.4
ATG4DQ86TL0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 RN7SL471P-201ENST00000580476 299 ntBASIC17.52■□□□□ 0.4
ATG4DQ86TL0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4DQ86TL0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms