Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
CCDC144BQ3MJ40 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 AC116562.2-201ENST00000507042 360 ntBASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 AC005363.2-201ENST00000618631 242 ntBASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CCDC144BQ3MJ40 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 AL390955.1-201ENST00000428694 934 ntBASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 KRT8P17-201ENST00000453110 1448 ntBASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CCDC144BQ3MJ40 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 KRT16P1-201ENST00000399124 1418 ntBASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 KRT18P35-201ENST00000510488 1269 ntBASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC144BQ3MJ40 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 CYP2D8P-201ENST00000433633 1490 ntBASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 LINC01568-207ENST00000641790 1380 ntBASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 AC005521.1-201ENST00000393351 872 ntBASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC144BQ3MJ40 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 FITM1-202ENST00000559294 800 ntBASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms