Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LIM2P55344 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LIM2P55344 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.37■□□□□ 0.53
LIM2P55344 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LIM2P55344 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
LIM2P55344 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIM2P55344 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.36■□□□□ 0.53
LIM2P55344 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIM2P55344 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.36■□□□□ 0.53
LIM2P55344 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.36■□□□□ 0.53
LIM2P55344 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.36■□□□□ 0.53
LIM2P55344 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.36■□□□□ 0.53
LIM2P55344 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.36■□□□□ 0.53
LIM2P55344 RARRES2P10-201ENST00000564312 460 ntBASIC18.36■□□□□ 0.53
LIM2P55344 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
LIM2P55344 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIM2P55344 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.35■□□□□ 0.53
LIM2P55344 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.35■□□□□ 0.53
LIM2P55344 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIM2P55344 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.35■□□□□ 0.53
LIM2P55344 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.35■□□□□ 0.53
LIM2P55344 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.35■□□□□ 0.53
LIM2P55344 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.35■□□□□ 0.53
LIM2P55344 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.35■□□□□ 0.53
LIM2P55344 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIM2P55344 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.35■□□□□ 0.53
LIM2P55344 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.35■□□□□ 0.53
LIM2P55344 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIM2P55344 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIM2P55344 ZNF815P-204ENST00000434898 1737 ntBASIC18.35■□□□□ 0.53
LIM2P55344 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.34■□□□□ 0.53
LIM2P55344 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.34■□□□□ 0.53
LIM2P55344 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIM2P55344 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIM2P55344 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.34■□□□□ 0.53
LIM2P55344 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 HLA-A-209ENST00000638375 975 ntBASIC18.34■□□□□ 0.53
LIM2P55344 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIM2P55344 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIM2P55344 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIM2P55344 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
LIM2P55344 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.33■□□□□ 0.53
LIM2P55344 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LIM2P55344 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIM2P55344 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
LIM2P55344 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.33■□□□□ 0.53
LIM2P55344 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.33■□□□□ 0.53
LIM2P55344 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.33■□□□□ 0.52
LIM2P55344 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIM2P55344 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIM2P55344 AL353807.1-201ENST00000427475 662 ntBASIC18.33■□□□□ 0.52
LIM2P55344 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms