Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NEK3P51956 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.94■□□□□ 0.78
NEK3P51956 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.94■□□□□ 0.78
NEK3P51956 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
NEK3P51956 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NEK3P51956 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.93■□□□□ 0.78
NEK3P51956 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
NEK3P51956 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.93■□□□□ 0.78
NEK3P51956 KRT16P5-201ENST00000455284 522 ntBASIC19.93■□□□□ 0.78
NEK3P51956 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.93■□□□□ 0.78
NEK3P51956 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NEK3P51956 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
NEK3P51956 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.93■□□□□ 0.78
NEK3P51956 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NEK3P51956 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NEK3P51956 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NEK3P51956 MIR4497-201ENST00000583208 89 ntBASIC19.92■□□□□ 0.78
NEK3P51956 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 AC004264.1-201ENST00000608354 794 ntBASIC19.92■□□□□ 0.78
NEK3P51956 AP001412.1-201ENST00000608405 714 ntBASIC19.92■□□□□ 0.78
NEK3P51956 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.92■□□□□ 0.78
NEK3P51956 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.92■□□□□ 0.78
NEK3P51956 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NEK3P51956 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
NEK3P51956 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NEK3P51956 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NEK3P51956 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NEK3P51956 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
NEK3P51956 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 SNORA78-201ENST00000459373 127 ntBASIC19.91■□□□□ 0.78
NEK3P51956 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NEK3P51956 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.91■□□□□ 0.78
NEK3P51956 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
NEK3P51956 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.91■□□□□ 0.78
NEK3P51956 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NEK3P51956 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.9■□□□□ 0.78
NEK3P51956 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NEK3P51956 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
NEK3P51956 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
NEK3P51956 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.9■□□□□ 0.78
NEK3P51956 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.9■□□□□ 0.78
NEK3P51956 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.9■□□□□ 0.78
NEK3P51956 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
NEK3P51956 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.9■□□□□ 0.78
NEK3P51956 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms