Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CDX1P47902 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CDX1P47902 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.73■□□□□ 0.11
CDX1P47902 AC090340.1-201ENST00000620778 4980 ntBASIC15.73■□□□□ 0.11
CDX1P47902 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
CDX1P47902 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 REXO2-208ENST00000539754 791 ntTSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC15.73■□□□□ 0.11
CDX1P47902 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CDX1P47902 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CDX1P47902 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDX1P47902 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
CDX1P47902 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CDX1P47902 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 KRT8P36-201ENST00000489121 1440 ntBASIC15.72■□□□□ 0.11
CDX1P47902 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.72■□□□□ 0.11
CDX1P47902 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.72■□□□□ 0.11
CDX1P47902 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15.72■□□□□ 0.11
CDX1P47902 AL138781.2-201ENST00000617896 1843 ntBASIC15.72■□□□□ 0.11
CDX1P47902 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.72■□□□□ 0.11
CDX1P47902 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CDX1P47902 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.72■□□□□ 0.11
CDX1P47902 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDX1P47902 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC15.71■□□□□ 0.11
CDX1P47902 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.71■□□□□ 0.11
CDX1P47902 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
CDX1P47902 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 AC018470.1-201ENST00000624790 3129 ntBASIC15.71■□□□□ 0.11
CDX1P47902 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CDX1P47902 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.71■□□□□ 0.11
CDX1P47902 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CDX1P47902 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC15.71■□□□□ 0.11
CDX1P47902 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
CDX1P47902 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 UNC93B4-201ENST00000505679 747 ntBASIC15.71■□□□□ 0.11
CDX1P47902 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
CDX1P47902 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.71■□□□□ 0.11
CDX1P47902 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.71■□□□□ 0.11
CDX1P47902 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDX1P47902 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
CDX1P47902 AL512408.1-201ENST00000569378 2000 ntBASIC15.71■□□□□ 0.11
CDX1P47902 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.1
CDX1P47902 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CDX1P47902 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CDX1P47902 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
CDX1P47902 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 ERF-202ENST00000440177 2032 ntTSL 2 BASIC15.7■□□□□ 0.1
CDX1P47902 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CDX1P47902 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms