Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SOX3P41225 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.18■□□□□ 0.5
SOX3P41225 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 TFP1-202ENST00000475455 1573 ntBASIC18.18■□□□□ 0.5
SOX3P41225 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.18■□□□□ 0.5
SOX3P41225 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SOX3P41225 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 KRT16P5-201ENST00000455284 522 ntBASIC18.18■□□□□ 0.5
SOX3P41225 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SOX3P41225 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.18■□□□□ 0.5
SOX3P41225 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SOX3P41225 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.18■□□□□ 0.5
SOX3P41225 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.18■□□□□ 0.5
SOX3P41225 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
SOX3P41225 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SOX3P41225 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SOX3P41225 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX3P41225 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX3P41225 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 AL596275.1-201ENST00000423464 877 ntBASIC18.17■□□□□ 0.5
SOX3P41225 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX3P41225 AC004264.1-201ENST00000608354 794 ntBASIC18.17■□□□□ 0.5
SOX3P41225 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 AP006587.1-201ENST00000534129 1502 ntBASIC18.17■□□□□ 0.5
SOX3P41225 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.17■□□□□ 0.5
SOX3P41225 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
SOX3P41225 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SOX3P41225 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.17■□□□□ 0.5
SOX3P41225 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SOX3P41225 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.16■□□□□ 0.5
SOX3P41225 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SOX3P41225 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SOX3P41225 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.16■□□□□ 0.5
SOX3P41225 RPS2P55-201ENST00000397318 883 ntBASIC18.16■□□□□ 0.5
SOX3P41225 AC012618.2-201ENST00000428058 849 ntBASIC18.16■□□□□ 0.5
SOX3P41225 AC107956.1-201ENST00000494359 873 ntBASIC18.16■□□□□ 0.5
SOX3P41225 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.16■□□□□ 0.5
SOX3P41225 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 RARRES2P10-201ENST00000564312 460 ntBASIC18.16■□□□□ 0.5
SOX3P41225 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SOX3P41225 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.16■□□□□ 0.5
SOX3P41225 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.16■□□□□ 0.5
SOX3P41225 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms