Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFC3P40938 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.7■□□□□ 0.42
RFC3P40938 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
RFC3P40938 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
RFC3P40938 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RFC3P40938 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.69■□□□□ 0.42
RFC3P40938 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.69■□□□□ 0.42
RFC3P40938 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.69■□□□□ 0.42
RFC3P40938 AC097488.1-201ENST00000507834 756 ntBASIC17.69■□□□□ 0.42
RFC3P40938 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.69■□□□□ 0.42
RFC3P40938 RCC2P6-201ENST00000526625 1557 ntBASIC17.69■□□□□ 0.42
RFC3P40938 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.69■□□□□ 0.42
RFC3P40938 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFC3P40938 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
RFC3P40938 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.68■□□□□ 0.42
RFC3P40938 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RFC3P40938 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
RFC3P40938 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RFC3P40938 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 TMPOP1-202ENST00000424642 1267 ntBASIC17.68■□□□□ 0.42
RFC3P40938 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 KRT18P57-201ENST00000443599 1254 ntBASIC17.68■□□□□ 0.42
RFC3P40938 AL020996.1-203ENST00000536896 2307 ntBASIC17.68■□□□□ 0.42
RFC3P40938 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.68■□□□□ 0.42
RFC3P40938 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 SLC25A1P4-201ENST00000567977 778 ntBASIC17.68■□□□□ 0.42
RFC3P40938 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RFC3P40938 AC011298.2-201ENST00000617989 482 ntBASIC17.68■□□□□ 0.42
RFC3P40938 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
RFC3P40938 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.68■□□□□ 0.42
RFC3P40938 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFC3P40938 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RFC3P40938 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.67■□□□□ 0.42
RFC3P40938 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
RFC3P40938 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.67■□□□□ 0.42
RFC3P40938 AC008040.2-201ENST00000461049 708 ntBASIC17.67■□□□□ 0.42
RFC3P40938 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.67■□□□□ 0.42
RFC3P40938 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 AC005363.2-201ENST00000618631 242 ntBASIC17.67■□□□□ 0.42
RFC3P40938 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.67■□□□□ 0.42
RFC3P40938 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
RFC3P40938 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFC3P40938 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 AC005521.1-201ENST00000393351 872 ntBASIC17.66■□□□□ 0.42
RFC3P40938 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.66■□□□□ 0.42
RFC3P40938 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
RFC3P40938 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms