Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.84■■□□□ 1.25
HMGB1P09429 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.84■■□□□ 1.25
HMGB1P09429 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
HMGB1P09429 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
HMGB1P09429 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.84■■□□□ 1.25
HMGB1P09429 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.83■■□□□ 1.25
HMGB1P09429 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
HMGB1P09429 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.83■■□□□ 1.25
HMGB1P09429 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
HMGB1P09429 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.83■■□□□ 1.25
HMGB1P09429 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.83■■□□□ 1.25
HMGB1P09429 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.83■■□□□ 1.25
HMGB1P09429 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.83■■□□□ 1.25
HMGB1P09429 HLA-A-209ENST00000638375 975 ntBASIC22.83■■□□□ 1.25
HMGB1P09429 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
HMGB1P09429 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
HMGB1P09429 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.83■■□□□ 1.24
HMGB1P09429 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
HMGB1P09429 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
HMGB1P09429 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.82■■□□□ 1.24
HMGB1P09429 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.82■■□□□ 1.24
HMGB1P09429 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.82■■□□□ 1.24
HMGB1P09429 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 LINC01465-201ENST00000408887 1940 ntBASIC22.82■■□□□ 1.24
HMGB1P09429 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.82■■□□□ 1.24
HMGB1P09429 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
HMGB1P09429 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
HMGB1P09429 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.82■■□□□ 1.24
HMGB1P09429 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.81■■□□□ 1.24
HMGB1P09429 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
HMGB1P09429 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGB1P09429 FAM201B-201ENST00000458407 597 ntBASIC22.81■■□□□ 1.24
HMGB1P09429 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC22.81■■□□□ 1.24
HMGB1P09429 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.81■■□□□ 1.24
HMGB1P09429 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.81■■□□□ 1.24
HMGB1P09429 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.81■■□□□ 1.24
HMGB1P09429 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.81■■□□□ 1.24
HMGB1P09429 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGB1P09429 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGB1P09429 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
HMGB1P09429 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
HMGB1P09429 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC22.81■■□□□ 1.24
HMGB1P09429 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.8■■□□□ 1.24
HMGB1P09429 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.8■■□□□ 1.24
HMGB1P09429 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC22.8■■□□□ 1.24
HMGB1P09429 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC22.8■■□□□ 1.24
HMGB1P09429 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.8■■□□□ 1.24
HMGB1P09429 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
HMGB1P09429 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
HMGB1P09429 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.8■■□□□ 1.24
HMGB1P09429 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.8■■□□□ 1.24
HMGB1P09429 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.8■■□□□ 1.24
HMGB1P09429 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
HMGB1P09429 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
HMGB1P09429 AL160286.2-201ENST00000567150 934 ntBASIC22.8■■□□□ 1.24
HMGB1P09429 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.8■■□□□ 1.24
HMGB1P09429 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
HMGB1P09429 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.79■■□□□ 1.24
HMGB1P09429 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.79■■□□□ 1.24
HMGB1P09429 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.79■■□□□ 1.24
HMGB1P09429 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.79■■□□□ 1.24
HMGB1P09429 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
HMGB1P09429 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.79■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms