Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CD74P04233 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CD74P04233 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
CD74P04233 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CD74P04233 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.26■□□□□ 0.19
CD74P04233 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.26■□□□□ 0.19
CD74P04233 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.26■□□□□ 0.19
CD74P04233 AC008406.3-201ENST00000620001 1374 ntBASIC16.26■□□□□ 0.19
CD74P04233 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CD74P04233 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.25■□□□□ 0.19
CD74P04233 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.25■□□□□ 0.19
CD74P04233 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CD74P04233 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CD74P04233 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.25■□□□□ 0.19
CD74P04233 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.25■□□□□ 0.19
CD74P04233 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CD74P04233 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.25■□□□□ 0.19
CD74P04233 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.25■□□□□ 0.19
CD74P04233 ABALON-201ENST00000629058 1903 ntBASIC16.25■□□□□ 0.19
CD74P04233 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CD74P04233 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 FZD10-202ENST00000539839 3282 ntBASIC16.24■□□□□ 0.19
CD74P04233 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 KRT19P1-201ENST00000405746 1186 ntBASIC16.24■□□□□ 0.19
CD74P04233 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC16.24■□□□□ 0.19
CD74P04233 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16.24■□□□□ 0.19
CD74P04233 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.24■□□□□ 0.19
CD74P04233 AC010536.3-201ENST00000620306 533 ntBASIC16.24■□□□□ 0.19
CD74P04233 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.24■□□□□ 0.19
CD74P04233 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CD74P04233 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.24■□□□□ 0.19
CD74P04233 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CD74P04233 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.23■□□□□ 0.19
CD74P04233 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.23■□□□□ 0.19
CD74P04233 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CD74P04233 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CD74P04233 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 AK1-201ENST00000223836 736 ntTSL 3 BASIC16.23■□□□□ 0.19
CD74P04233 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.23■□□□□ 0.19
CD74P04233 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CD74P04233 KRT18P68-201ENST00000392293 1000 ntBASIC16.23■□□□□ 0.19
CD74P04233 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.23■□□□□ 0.19
CD74P04233 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CD74P04233 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms