Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A1P02462 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A1P02462 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.74■■□□□ 1.39
COL4A1P02462 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
COL4A1P02462 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A1P02462 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC23.74■■□□□ 1.39
COL4A1P02462 AL121894.2-201ENST00000602977 491 ntBASIC23.74■■□□□ 1.39
COL4A1P02462 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.74■■□□□ 1.39
COL4A1P02462 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A1P02462 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
COL4A1P02462 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A1P02462 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 DUSP5P1-201ENST00000441325 1139 ntBASIC23.73■■□□□ 1.39
COL4A1P02462 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC23.73■■□□□ 1.39
COL4A1P02462 AP000550.4-202ENST00000639755 178 ntBASIC23.73■■□□□ 1.39
COL4A1P02462 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A1P02462 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL4A1P02462 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.73■■□□□ 1.39
COL4A1P02462 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
COL4A1P02462 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A1P02462 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL4A1P02462 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC23.73■■□□□ 1.39
COL4A1P02462 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.73■■□□□ 1.39
COL4A1P02462 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A1P02462 HYMAI.1-201ENST00000620949 238 ntBASIC23.73■■□□□ 1.39
COL4A1P02462 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
COL4A1P02462 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A1P02462 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 MED25-212ENST00000618715 1467 ntTSL 5 BASIC23.72■■□□□ 1.39
COL4A1P02462 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A1P02462 PCED1CP-201ENST00000419887 785 ntBASIC23.72■■□□□ 1.39
COL4A1P02462 TSPY23P-201ENST00000440136 739 ntBASIC23.72■■□□□ 1.39
COL4A1P02462 AL671277.2-201ENST00000458060 996 ntBASIC23.72■■□□□ 1.39
COL4A1P02462 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A1P02462 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC23.72■■□□□ 1.39
COL4A1P02462 TOLLIP-AS1-201ENST00000530897 939 ntBASIC23.72■■□□□ 1.39
COL4A1P02462 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC23.72■■□□□ 1.39
COL4A1P02462 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC23.72■■□□□ 1.39
COL4A1P02462 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A1P02462 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A1P02462 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.72■■□□□ 1.39
COL4A1P02462 SDHAP1-207ENST00000440850 2000 ntBASIC23.71■■□□□ 1.39
COL4A1P02462 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC23.71■■□□□ 1.39
COL4A1P02462 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC23.71■■□□□ 1.39
COL4A1P02462 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.71■■□□□ 1.39
COL4A1P02462 LINC01006-201ENST00000333319 2292 ntBASIC23.71■■□□□ 1.39
COL4A1P02462 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A1P02462 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL4A1P02462 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL4A1P02462 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL4A1P02462 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
COL4A1P02462 AC112907.2-201ENST00000448639 330 ntBASIC23.7■■□□□ 1.39
COL4A1P02462 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.7■■□□□ 1.39
COL4A1P02462 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 ANKRD18DP-204ENST00000455355 1975 ntBASIC23.7■■□□□ 1.38
COL4A1P02462 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A1P02462 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A1P02462 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.7■■□□□ 1.38
COL4A1P02462 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A1P02462 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 AC092647.4-201ENST00000457211 535 ntBASIC23.7■■□□□ 1.38
COL4A1P02462 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC23.7■■□□□ 1.38
COL4A1P02462 PRSS44-201ENST00000515154 1146 ntBASIC23.7■■□□□ 1.38
COL4A1P02462 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A1P02462 LINC01238-205ENST00000567549 1107 ntBASIC23.7■■□□□ 1.38
COL4A1P02462 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A1P02462 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC23.7■■□□□ 1.38
COL4A1P02462 AL121956.5-201ENST00000625261 221 ntBASIC23.7■■□□□ 1.38
COL4A1P02462 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A1P02462 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.7■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms