Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 AC097658.1-201ENST00000475555 843 ntBASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHA3Q9Y5H8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHA3Q9Y5H8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 PNMA6B-201ENST00000538162 1200 ntBASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHA3Q9Y5H8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 AC060766.5-201ENST00000590539 871 ntBASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 AC120498.8-201ENST00000614275 531 ntBASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHA3Q9Y5H8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 KRT18P16-201ENST00000510337 1294 ntBASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHA3Q9Y5H8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms