Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 AP003041.3-201ENST00000527151 707 ntBASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHGA1Q9Y5H4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 AC006128.1-201ENST00000624704 1661 ntBASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 NEK4P2-201ENST00000580004 1012 ntBASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 AC007225.1-201ENST00000566331 1836 ntBASIC18.63■□□□□ 0.57
PCDHGA1Q9Y5H4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 KRT18P38-201ENST00000449496 1282 ntBASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDHGA1Q9Y5H4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 ZNF444P1-201ENST00000559497 298 ntBASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDHGA1Q9Y5H4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHGA1Q9Y5H4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms