Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 C1QL1P1-201ENST00000568105 661 ntBASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 AL359736.2-201ENST00000621992 437 ntBASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 AL032819.2-201ENST00000624543 2162 ntBASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 AC104417.2-201ENST00000562989 1793 ntBASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 AL158047.1-201ENST00000445918 881 ntBASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4BQ9Y4P1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4BQ9Y4P1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
ATG4BQ9Y4P1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
ATG4BQ9Y4P1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.33■□□□□ 0.53
ATG4BQ9Y4P1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4BQ9Y4P1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 LINC01465-201ENST00000408887 1940 ntBASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4BQ9Y4P1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 SDHAP1-207ENST00000440850 2000 ntBASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.32■□□□□ 0.52
ATG4BQ9Y4P1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4BQ9Y4P1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ATG4BQ9Y4P1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
ATG4BQ9Y4P1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms