Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TMEM241-201ENST00000383233 2934 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.594e-9■■■■□ 20.9
UPF1Q92900 TMEM241-204ENST00000475185 2350 ntTSL 1 (best)11.32□□□□□ -0.64e-9■■■■□ 20.9
UPF1Q92900 MCM6-201ENST00000264156 3736 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.84e-6■■■■□ 20.9
UPF1Q92900 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC9.05□□□□□ -0.962e-6■■■■□ 20.9
UPF1Q92900 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.064e-9■■■■□ 20.9
UPF1Q92900 TMEM132A-210ENST00000540112 2013 ntTSL 224.23■■□□□ 1.471e-6■■■■□ 20.9
UPF1Q92900 TMEM132A-204ENST00000535480 692 ntTSL 320.71■□□□□ 0.911e-6■■■■□ 20.9
UPF1Q92900 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.571e-6■■■■□ 20.9
UPF1Q92900 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.381e-6■■■■□ 20.9
UPF1Q92900 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.072e-7■■■■□ 20.9
UPF1Q92900 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.323e-13■■■■□ 20.9
UPF1Q92900 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.246e-8■■■■□ 20.9
UPF1Q92900 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.15□□□□□ -1.276e-8■■■■□ 20.9
UPF1Q92900 TTYH3-205ENST00000429448 756 ntTSL 214.77□□□□□ -0.051e-39■■■■□ 20.9
UPF1Q92900 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.553e-14■■■■□ 20.9
UPF1Q92900 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC9.7□□□□□ -0.863e-14■■■■□ 20.9
UPF1Q92900 CASP10-201ENST00000272879 2073 ntTSL 2 BASIC10.05□□□□□ -0.81e-9■■■■□ 20.9
UPF1Q92900 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC8.96□□□□□ -0.981e-9■■■■□ 20.9
UPF1Q92900 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.321e-9■■■■□ 20.9
UPF1Q92900 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.66□□□□□ -1.341e-9■■■■□ 20.9
UPF1Q92900 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.421e-9■■■■□ 20.9
UPF1Q92900 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.16■□□□□ 0.665e-7■■■■□ 20.9
UPF1Q92900 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.535e-7■■■■□ 20.9
UPF1Q92900 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.7■□□□□ 0.425e-7■■■■□ 20.9
UPF1Q92900 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.33■□□□□ 0.365e-7■■■■□ 20.9
UPF1Q92900 JMJD4-205ENST00000485807 3749 ntTSL 212.09□□□□□ -0.475e-7■■■■□ 20.9
UPF1Q92900 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.094e-8■■■■□ 20.9
UPF1Q92900 IL17RE-204ENST00000434065 2541 ntTSL 221.47■■□□□ 1.034e-8■■■■□ 20.9
UPF1Q92900 IL17RE-202ENST00000383815 2808 ntTSL 220.17■□□□□ 0.824e-8■■■■□ 20.9
UPF1Q92900 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.34■□□□□ 0.694e-8■■■■□ 20.9
UPF1Q92900 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.711e-14■■■■□ 20.9
UPF1Q92900 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC28.66■■■□□ 2.187e-6■■■■□ 20.9
UPF1Q92900 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.388e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-210ENST00000543126 3502 ntTSL 1 (best) BASIC11.99□□□□□ -0.498e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-205ENST00000375279 7617 ntTSL 5 BASIC11.14□□□□□ -0.638e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC9.61□□□□□ -0.878e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-204ENST00000359606 7274 ntTSL 2 BASIC9.11□□□□□ -0.958e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC9.1□□□□□ -0.958e-8■■■■□ 20.9
UPF1Q92900 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC8.24□□□□□ -1.098e-8■■■■□ 20.9
UPF1Q92900 NDST1-205ENST00000521752 569 ntTSL 420.26■□□□□ 0.836e-10■■■■□ 20.9
UPF1Q92900 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC24.6■■□□□ 1.533e-8■■■■□ 20.9
UPF1Q92900 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.07■■□□□ 1.443e-8■■■■□ 20.9
UPF1Q92900 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.643e-8■■■■□ 20.9
UPF1Q92900 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.473e-8■■■■□ 20.9
UPF1Q92900 PDAP1-204ENST00000496335 302 ntTSL 320.44■□□□□ 0.861e-17■■■■□ 20.8
UPF1Q92900 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.321e-7■■■■□ 20.8
UPF1Q92900 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.491e-6■■■■□ 20.8
UPF1Q92900 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.54■□□□□ 0.241e-6■■■■□ 20.8
UPF1Q92900 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.151e-6■■■■□ 20.8
UPF1Q92900 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC11.65□□□□□ -0.548e-8■■■■□ 20.8
UPF1Q92900 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.83■□□□□ 0.283e-7■■■■□ 20.8
UPF1Q92900 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC14.08□□□□□ -0.153e-7■■■■□ 20.8
UPF1Q92900 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.5□□□□□ -0.253e-7■■■■□ 20.8
UPF1Q92900 PSME3-205ENST00000545225 3082 ntTSL 2 BASIC12.46□□□□□ -0.413e-7■■■■□ 20.8
UPF1Q92900 PSME3-201ENST00000293362 3144 ntTSL 1 (best) BASIC11.28□□□□□ -0.63e-7■■■■□ 20.8
UPF1Q92900 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.42■■□□□ 1.183e-6■■■■□ 20.8
UPF1Q92900 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.393e-6■■■■□ 20.8
UPF1Q92900 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC12.14□□□□□ -0.473e-6■■■■□ 20.8
UPF1Q92900 TBL1X-206ENST00000424279 5451 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.483e-6■■■■□ 20.8
UPF1Q92900 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.82■■□□□ 1.42e-7■■■■□ 20.8
UPF1Q92900 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.932e-7■■■■□ 20.8
UPF1Q92900 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.05■□□□□ 0.82e-7■■■■□ 20.8
UPF1Q92900 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.43■□□□□ 0.382e-7■■■■□ 20.8
UPF1Q92900 AC018521.1-202ENST00000641877 2655 ntBASIC13.29□□□□□ -0.289e-7■■■■□ 20.8
UPF1Q92900 EMILIN1-202ENST00000433140 1431 ntTSL 226.11■■□□□ 1.772e-7■■■■□ 20.8
UPF1Q92900 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.042e-7■■■■□ 20.8
UPF1Q92900 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.132e-8■■■■□ 20.8
UPF1Q92900 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC11.23□□□□□ -0.612e-8■■■■□ 20.8
UPF1Q92900 AL390195.1-201ENST00000445680 415 ntTSL 38.67□□□□□ -1.022e-8■■■■□ 20.8
UPF1Q92900 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.165e-15■■■■□ 20.8
UPF1Q92900 ELAVL1-204ENST00000596154 880 ntTSL 311.86□□□□□ -0.515e-15■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-207ENST00000585246 1051 ntAPPRIS ALT2 TSL 230.44■■■□□ 2.461e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-204ENST00000453656 1327 ntTSL 225.19■■□□□ 1.621e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-201ENST00000421600 999 ntAPPRIS ALT2 TSL 524.08■■□□□ 1.451e-10■■■■□ 20.8
UPF1Q92900 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.321e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-206ENST00000583227 1540 ntAPPRIS ALT2 TSL 522.78■■□□□ 1.241e-10■■■■□ 20.8
UPF1Q92900 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.191e-10■■■■□ 20.8
UPF1Q92900 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.161e-10■■■■□ 20.8
UPF1Q92900 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 11e-10■■■■□ 20.8
UPF1Q92900 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.331e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-203ENST00000428388 2878 ntAPPRIS P5 TSL 216.42■□□□□ 0.221e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.211e-10■■■■□ 20.8
UPF1Q92900 PPT2-EGFL8-205ENST00000479001 944 ntTSL 512.71□□□□□ -0.371e-10■■■■□ 20.8
UPF1Q92900 AC020915.2-201ENST00000591325 4227 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.242e-6■■■■□ 20.8
UPF1Q92900 AC020915.6-201ENST00000637233 3042 ntAPPRIS P5 TSL 5 BASIC11.87□□□□□ -0.512e-6■■■■□ 20.8
UPF1Q92900 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.69■□□□□ 0.93e-10■■■■□ 20.8
UPF1Q92900 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.432e-7■■■■□ 20.8
UPF1Q92900 SH3BP1-203ENST00000451997 3123 ntTSL 212.81□□□□□ -0.362e-7■■■■□ 20.8
UPF1Q92900 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.023e-7■■■■□ 20.8
UPF1Q92900 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC33.92■■■■□ 3.029e-8■■■■□ 20.8
UPF1Q92900 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.929e-8■■■■□ 20.8
UPF1Q92900 TMEM55B-203ENST00000553460 811 ntTSL 523.83■■□□□ 1.419e-8■■■■□ 20.8
UPF1Q92900 TMEM55B-207ENST00000557041 3453 ntTSL 215.71■□□□□ 0.119e-8■■■■□ 20.8
UPF1Q92900 NPLOC4-218ENST00000574964 572 ntTSL 419.06■□□□□ 0.648e-7■■■■□ 20.8
UPF1Q92900 IRAK1-213ENST00000477274 705 ntTSL 517.77■□□□□ 0.446e-9■■■■□ 20.8
UPF1Q92900 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC29.37■■■□□ 2.291e-10■■■■□ 20.8
UPF1Q92900 YIF1B-206ENST00000586319 936 ntTSL 324.04■■□□□ 1.441e-10■■■■□ 20.8
UPF1Q92900 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC23.8■■□□□ 1.41e-10■■■■□ 20.8
UPF1Q92900 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC23.8■■□□□ 1.41e-10■■■■□ 20.8
UPF1Q92900 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.371e-10■■■■□ 20.8
Retrieved 100 of 15,879 protein–RNA pairs in 104.2 ms