Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUDCD3Q8IVD9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 AC009113.1-201ENST00000570267 2443 ntBASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 MIR638-201ENST00000385237 100 ntBASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 AC068338.2-201ENST00000563278 1430 ntBASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUDCD3Q8IVD9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 AL355472.2-201ENST00000422958 438 ntBASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 C2orf69P4-201ENST00000565394 541 ntBASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NUDCD3Q8IVD9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 LETM1P2-201ENST00000597330 2178 ntBASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
NUDCD3Q8IVD9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms