Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX2P35548 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
MSX2P35548 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX2P35548 UBE2DNL-204ENST00000602536 740 ntBASIC18.5■□□□□ 0.55
MSX2P35548 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
MSX2P35548 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.49■□□□□ 0.55
MSX2P35548 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.49■□□□□ 0.55
MSX2P35548 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MSX2P35548 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.49■□□□□ 0.55
MSX2P35548 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.49■□□□□ 0.55
MSX2P35548 AC016405.3-201ENST00000607710 860 ntBASIC18.49■□□□□ 0.55
MSX2P35548 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
MSX2P35548 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
MSX2P35548 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSX2P35548 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.48■□□□□ 0.55
MSX2P35548 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.48■□□□□ 0.55
MSX2P35548 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 AL031598.1-201ENST00000561511 1773 ntBASIC18.48■□□□□ 0.55
MSX2P35548 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.48■□□□□ 0.55
MSX2P35548 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.48■□□□□ 0.55
MSX2P35548 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 AC068880.1-201ENST00000507289 2297 ntBASIC18.48■□□□□ 0.55
MSX2P35548 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MSX2P35548 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
MSX2P35548 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
MSX2P35548 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 AL591742.1-201ENST00000604433 565 ntBASIC18.47■□□□□ 0.55
MSX2P35548 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.47■□□□□ 0.55
MSX2P35548 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
MSX2P35548 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.47■□□□□ 0.55
MSX2P35548 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.47■□□□□ 0.55
MSX2P35548 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.47■□□□□ 0.55
MSX2P35548 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.47■□□□□ 0.55
MSX2P35548 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MSX2P35548 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSX2P35548 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms