Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.53■■□□□ 1.2
PRPF40AO75400 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PRPF40AO75400 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PRPF40AO75400 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PRPF40AO75400 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.53■■□□□ 1.2
PRPF40AO75400 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.52■■□□□ 1.2
PRPF40AO75400 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.52■■□□□ 1.2
PRPF40AO75400 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.52■■□□□ 1.2
PRPF40AO75400 AL390961.4-201ENST00000623958 2535 ntBASIC22.52■■□□□ 1.2
PRPF40AO75400 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
PRPF40AO75400 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
PRPF40AO75400 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.52■■□□□ 1.2
PRPF40AO75400 AC141586.3-201ENST00000562166 1838 ntBASIC22.52■■□□□ 1.2
PRPF40AO75400 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
PRPF40AO75400 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PRPF40AO75400 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
PRPF40AO75400 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
PRPF40AO75400 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
PRPF40AO75400 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.51■■□□□ 1.19
PRPF40AO75400 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 MCRIP2P1-201ENST00000394346 511 ntBASIC22.51■■□□□ 1.19
PRPF40AO75400 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.51■■□□□ 1.19
PRPF40AO75400 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 AC013268.1-206ENST00000638368 961 ntBASIC22.51■■□□□ 1.19
PRPF40AO75400 AC112229.1-201ENST00000639295 961 ntBASIC22.51■■□□□ 1.19
PRPF40AO75400 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PRPF40AO75400 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
PRPF40AO75400 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 AC135050.7-201ENST00000624508 2218 ntBASIC22.5■■□□□ 1.19
PRPF40AO75400 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.5■■□□□ 1.19
PRPF40AO75400 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.5■■□□□ 1.19
PRPF40AO75400 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.5■■□□□ 1.19
PRPF40AO75400 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.5■■□□□ 1.19
PRPF40AO75400 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
PRPF40AO75400 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.5■■□□□ 1.19
PRPF40AO75400 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PRPF40AO75400 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.5■■□□□ 1.19
PRPF40AO75400 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.5■■□□□ 1.19
PRPF40AO75400 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC22.5■■□□□ 1.19
PRPF40AO75400 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
PRPF40AO75400 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.49■■□□□ 1.19
PRPF40AO75400 AL133373.2-201ENST00000623187 2828 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 WIZP1-201ENST00000531444 2299 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PRPF40AO75400 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 AC007322.4-201ENST00000509611 723 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 DUX4L16-201ENST00000555130 1264 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 AL162412.1-201ENST00000567129 965 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.49■■□□□ 1.19
PRPF40AO75400 AC105020.6-201ENST00000621523 1217 ntBASIC22.49■■□□□ 1.19
PRPF40AO75400 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC22.49■■□□□ 1.19
PRPF40AO75400 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms