Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 KRT8P17-201ENST00000453110 1448 ntBASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 NAPSB-206ENST00000562112 1266 ntBASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 MIR6786-201ENST00000616843 113 ntBASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TMX2-CTNND1H3BSU7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 MIR1238-201ENST00000408483 83 ntBASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 FITM1-202ENST00000559294 800 ntBASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 AL049597.2-201ENST00000565575 961 ntBASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 AP000525.1-201ENST00000608286 694 ntBASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 LINC01568-207ENST00000641790 1380 ntBASIC19.02■□□□□ 0.64
TMX2-CTNND1H3BSU7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC079598.2-202ENST00000546624 1451 ntBASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TMX2-CTNND1H3BSU7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 PTBP1P-201ENST00000554374 1601 ntBASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 RN7SL850P-201ENST00000579959 291 ntBASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 AL031985.4-201ENST00000642138 673 ntBASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 AP000974.1-201ENST00000623909 2387 ntBASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TMX2-CTNND1H3BSU7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TMX2-CTNND1H3BSU7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TMX2-CTNND1H3BSU7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms