Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 AC016405.3-201ENST00000607710 860 ntBASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 AC105020.6-201ENST00000621523 1217 ntBASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 AC018553.1-201ENST00000616682 1458 ntBASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TCRBV3S1A0A5B6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 MCRIP2P1-201ENST00000394346 511 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 YBX1P1-201ENST00000445822 960 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 AC023632.3-201ENST00000521633 145 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 MFSD11-216ENST00000590393 1141 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 UBE2DNL-204ENST00000602536 740 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 AC110285.6-201ENST00000617652 491 ntBASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TCRBV3S1A0A5B6 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 ABALON-201ENST00000629058 1903 ntBASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 AC100791.3-201ENST00000617619 330 ntBASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TCRBV3S1A0A5B6 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 TERF1P5-201ENST00000477545 1207 ntBASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 MYCNOS-205ENST00000641950 531 ntBASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 AC067852.2-201ENST00000590513 2313 ntBASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TCRBV3S1A0A5B6 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms