Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV1-1A0A0B4J248 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 AC073592.3-201ENST00000625118 1834 ntBASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV1-1A0A0B4J248 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 AL355001.2-201ENST00000620617 1191 ntBASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 ANO7L1-203ENST00000602586 1720 ntBASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV1-1A0A0B4J248 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 LINC00896-202ENST00000609602 2128 ntBASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV1-1A0A0B4J248 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms