Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
MMP28Q9H239 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.1■□□□□ 0.33
MMP28Q9H239 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 BX119927.1-201ENST00000636596 1552 ntBASIC17.1■□□□□ 0.33
MMP28Q9H239 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.1■□□□□ 0.33
MMP28Q9H239 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.1■□□□□ 0.33
MMP28Q9H239 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
MMP28Q9H239 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
MMP28Q9H239 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MMP28Q9H239 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.09■□□□□ 0.33
MMP28Q9H239 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.09■□□□□ 0.33
MMP28Q9H239 AP001160.3-201ENST00000601484 763 ntBASIC17.09■□□□□ 0.33
MMP28Q9H239 AC120498.10-201ENST00000621827 505 ntBASIC17.09■□□□□ 0.33
MMP28Q9H239 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.09■□□□□ 0.33
MMP28Q9H239 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.09■□□□□ 0.33
MMP28Q9H239 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
MMP28Q9H239 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MMP28Q9H239 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MMP28Q9H239 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MMP28Q9H239 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MMP28Q9H239 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
MMP28Q9H239 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
MMP28Q9H239 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.08■□□□□ 0.33
MMP28Q9H239 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.08■□□□□ 0.33
MMP28Q9H239 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
MMP28Q9H239 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
MMP28Q9H239 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.08■□□□□ 0.33
MMP28Q9H239 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.08■□□□□ 0.33
MMP28Q9H239 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.08■□□□□ 0.32
MMP28Q9H239 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MMP28Q9H239 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.08■□□□□ 0.32
MMP28Q9H239 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.08■□□□□ 0.32
MMP28Q9H239 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
MMP28Q9H239 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.08■□□□□ 0.32
MMP28Q9H239 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MMP28Q9H239 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.08■□□□□ 0.32
MMP28Q9H239 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 AC061975.6-201ENST00000579045 1553 ntBASIC17.07■□□□□ 0.32
MMP28Q9H239 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
MMP28Q9H239 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MMP28Q9H239 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.07■□□□□ 0.32
MMP28Q9H239 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.07■□□□□ 0.32
MMP28Q9H239 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MMP28Q9H239 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MMP28Q9H239 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 AL354751.1-201ENST00000412768 1863 ntBASIC17.07■□□□□ 0.32
MMP28Q9H239 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
MMP28Q9H239 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MMP28Q9H239 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.07■□□□□ 0.32
MMP28Q9H239 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MMP28Q9H239 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
MMP28Q9H239 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MMP28Q9H239 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MMP28Q9H239 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MMP28Q9H239 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.06■□□□□ 0.32
MMP28Q9H239 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.06■□□□□ 0.32
MMP28Q9H239 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.06■□□□□ 0.32
MMP28Q9H239 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MMP28Q9H239 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MMP28Q9H239 AC067852.2-201ENST00000590513 2313 ntBASIC17.06■□□□□ 0.32
MMP28Q9H239 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms