Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
IFT140Q96RY7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
IFT140Q96RY7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC32.33■■■□□ 2.77
IFT140Q96RY7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC32.33■■■□□ 2.77
IFT140Q96RY7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC32.33■■■□□ 2.77
IFT140Q96RY7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 KRT18P31-201ENST00000506277 1292 ntBASIC32.33■■■□□ 2.77
IFT140Q96RY7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC32.33■■■□□ 2.77
IFT140Q96RY7 BX640515.1-201ENST00000617215 977 ntBASIC32.33■■■□□ 2.77
IFT140Q96RY7 AC117500.6-201ENST00000624871 588 ntBASIC32.33■■■□□ 2.77
IFT140Q96RY7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC32.33■■■□□ 2.77
IFT140Q96RY7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.77
IFT140Q96RY7 TBC1D3P2-202ENST00000577902 1649 ntBASIC32.32■■■□□ 2.77
IFT140Q96RY7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC32.32■■■□□ 2.77
IFT140Q96RY7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.77
IFT140Q96RY7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 HLA-A-201ENST00000376802 1334 ntBASIC32.32■■■□□ 2.76
IFT140Q96RY7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
IFT140Q96RY7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.76
IFT140Q96RY7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 PMS2P1-201ENST00000431037 1228 ntBASIC32.31■■■□□ 2.76
IFT140Q96RY7 AC091304.2-201ENST00000564639 760 ntBASIC32.31■■■□□ 2.76
IFT140Q96RY7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
IFT140Q96RY7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
IFT140Q96RY7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
IFT140Q96RY7 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
IFT140Q96RY7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC32.3■■■□□ 2.76
IFT140Q96RY7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
IFT140Q96RY7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
IFT140Q96RY7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC32.3■■■□□ 2.76
IFT140Q96RY7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
IFT140Q96RY7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC32.3■■■□□ 2.76
IFT140Q96RY7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
IFT140Q96RY7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
IFT140Q96RY7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
IFT140Q96RY7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 KRT18P13-201ENST00000400056 1290 ntBASIC32.29■■■□□ 2.76
IFT140Q96RY7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 AL121912.1-201ENST00000603683 238 ntBASIC32.29■■■□□ 2.76
IFT140Q96RY7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
IFT140Q96RY7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
IFT140Q96RY7 AL117328.2-201ENST00000624617 1940 ntBASIC32.29■■■□□ 2.76
IFT140Q96RY7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
IFT140Q96RY7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 PNN-202ENST00000553331 656 ntTSL 3 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC32.29■■■□□ 2.76
IFT140Q96RY7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 HLA-F-220ENST00000434407 884 ntBASIC32.28■■■□□ 2.76
IFT140Q96RY7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
IFT140Q96RY7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC32.28■■■□□ 2.76
IFT140Q96RY7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC32.27■■■□□ 2.76
IFT140Q96RY7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
IFT140Q96RY7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
IFT140Q96RY7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
IFT140Q96RY7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC32.27■■■□□ 2.76
IFT140Q96RY7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
IFT140Q96RY7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC32.26■■■□□ 2.76
IFT140Q96RY7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC32.26■■■□□ 2.76
IFT140Q96RY7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC32.26■■■□□ 2.76
IFT140Q96RY7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 PENK-208ENST00000523051 772 ntTSL 5 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.75
IFT140Q96RY7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC32.26■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms