Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 AC004408.2-201ENST00000623613 2777 ntBASIC14.54□□□□□ -0.08
LINC00477Q96M19 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 RAP2CP1-201ENST00000605103 478 ntBASIC14.54□□□□□ -0.08
LINC00477Q96M19 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC14.54□□□□□ -0.08
LINC00477Q96M19 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC00477Q96M19 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 AC026185.1-201ENST00000445748 174 ntBASIC14.53□□□□□ -0.08
LINC00477Q96M19 NME6-213ENST00000451657 871 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC00477Q96M19 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LINC00477Q96M19 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
LINC00477Q96M19 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00477Q96M19 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
LINC00477Q96M19 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.52□□□□□ -0.08
LINC00477Q96M19 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms