Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 UNC93B8-201ENST00000511903 705 ntBASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC28AQ8IWP9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC28AQ8IWP9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
CCDC28AQ8IWP9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
CCDC28AQ8IWP9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC28AQ8IWP9 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 AL356740.2-201ENST00000601559 647 ntBASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 AC103702.1-201ENST00000548801 2630 ntBASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 WIZP1-201ENST00000531444 2299 ntBASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC28AQ8IWP9 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 TMEM179-206ENST00000616017 1645 ntBASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms