Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 AP006587.1-201ENST00000534129 1502 ntBASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC40Q4G0X9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 HLA-L-209ENST00000420110 1011 ntBASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 AC008687.6-201ENST00000596318 630 ntBASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CCDC40Q4G0X9 AP000974.1-201ENST00000623909 2387 ntBASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 BX323043.1-201ENST00000641006 1765 ntBASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CCDC40Q4G0X9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC21.33■■□□□ 1
CCDC40Q4G0X9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC40Q4G0X9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC40Q4G0X9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC40Q4G0X9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CCDC40Q4G0X9 AC098818.2-201ENST00000564925 2320 ntBASIC21.33■■□□□ 1
CCDC40Q4G0X9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
CCDC40Q4G0X9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CCDC40Q4G0X9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC40Q4G0X9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CCDC40Q4G0X9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms