Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM4P67936 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM4P67936 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TPM4P67936 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM4P67936 RARRES2P4-201ENST00000514074 484 ntBASIC21.75■■□□□ 1.07
TPM4P67936 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.75■■□□□ 1.07
TPM4P67936 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.75■■□□□ 1.07
TPM4P67936 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.75■■□□□ 1.07
TPM4P67936 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.75■■□□□ 1.07
TPM4P67936 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM4P67936 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
TPM4P67936 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
TPM4P67936 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TPM4P67936 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 AC023632.3-201ENST00000521633 145 ntBASIC21.74■■□□□ 1.07
TPM4P67936 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.74■■□□□ 1.07
TPM4P67936 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM4P67936 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.74■■□□□ 1.07
TPM4P67936 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.74■■□□□ 1.07
TPM4P67936 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.74■■□□□ 1.07
TPM4P67936 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.73■■□□□ 1.07
TPM4P67936 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
TPM4P67936 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 PKD1P1-201ENST00000458669 6805 ntBASIC21.73■■□□□ 1.07
TPM4P67936 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.73■■□□□ 1.07
TPM4P67936 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.73■■□□□ 1.07
TPM4P67936 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.73■■□□□ 1.07
TPM4P67936 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.73■■□□□ 1.07
TPM4P67936 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.73■■□□□ 1.07
TPM4P67936 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.73■■□□□ 1.07
TPM4P67936 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TPM4P67936 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.73■■□□□ 1.07
TPM4P67936 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM4P67936 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
TPM4P67936 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
TPM4P67936 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
TPM4P67936 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 KRT18P11-201ENST00000435214 1283 ntBASIC21.72■■□□□ 1.07
TPM4P67936 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
TPM4P67936 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.72■■□□□ 1.07
TPM4P67936 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.72■■□□□ 1.07
TPM4P67936 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
TPM4P67936 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 CROCCP3-202ENST00000420820 1947 ntBASIC21.72■■□□□ 1.07
TPM4P67936 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TPM4P67936 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.71■■□□□ 1.07
TPM4P67936 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
TPM4P67936 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.71■■□□□ 1.07
TPM4P67936 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TPM4P67936 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.71■■□□□ 1.07
TPM4P67936 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TPM4P67936 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
TPM4P67936 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.71■■□□□ 1.07
TPM4P67936 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
TPM4P67936 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
TPM4P67936 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
TPM4P67936 AL161938.1-201ENST00000569833 2180 ntBASIC21.71■■□□□ 1.07
TPM4P67936 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TPM4P67936 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms