Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 AC011506.1-201ENST00000474329 610 ntBASIC25.47■■□□□ 1.67
RIPK4P57078 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.47■■□□□ 1.67
RIPK4P57078 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.47■■□□□ 1.67
RIPK4P57078 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC25.47■■□□□ 1.67
RIPK4P57078 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
RIPK4P57078 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
RIPK4P57078 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RIPK4P57078 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC25.47■■□□□ 1.67
RIPK4P57078 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC25.47■■□□□ 1.67
RIPK4P57078 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
RIPK4P57078 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
RIPK4P57078 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
RIPK4P57078 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.46■■□□□ 1.67
RIPK4P57078 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
RIPK4P57078 RNF165-205ENST00000588679 2904 ntBASIC25.46■■□□□ 1.67
RIPK4P57078 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.46■■□□□ 1.67
RIPK4P57078 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 AL160286.2-201ENST00000567150 934 ntBASIC25.46■■□□□ 1.67
RIPK4P57078 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
RIPK4P57078 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
RIPK4P57078 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.67
RIPK4P57078 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC25.45■■□□□ 1.67
RIPK4P57078 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
RIPK4P57078 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.45■■□□□ 1.66
RIPK4P57078 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.66
RIPK4P57078 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.45■■□□□ 1.66
RIPK4P57078 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.45■■□□□ 1.66
RIPK4P57078 DECR2-212ENST00000627716 352 ntTSL 2 BASIC25.45■■□□□ 1.66
RIPK4P57078 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC25.45■■□□□ 1.66
RIPK4P57078 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
RIPK4P57078 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RIPK4P57078 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
RIPK4P57078 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC25.44■■□□□ 1.66
RIPK4P57078 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
RIPK4P57078 Z85996.1-201ENST00000494644 937 ntBASIC25.44■■□□□ 1.66
RIPK4P57078 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.44■■□□□ 1.66
RIPK4P57078 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC25.44■■□□□ 1.66
RIPK4P57078 AC026271.3-201ENST00000571884 352 ntBASIC25.44■■□□□ 1.66
RIPK4P57078 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RIPK4P57078 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC25.44■■□□□ 1.66
RIPK4P57078 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RIPK4P57078 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RIPK4P57078 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
RIPK4P57078 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.43■■□□□ 1.66
RIPK4P57078 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 ADM-207ENST00000530439 1839 ntTSL 2 BASIC25.43■■□□□ 1.66
RIPK4P57078 AC008040.2-201ENST00000461049 708 ntBASIC25.43■■□□□ 1.66
RIPK4P57078 B3GAT3P1-201ENST00000471720 806 ntBASIC25.43■■□□□ 1.66
RIPK4P57078 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 MIR6786-201ENST00000616843 113 ntBASIC25.43■■□□□ 1.66
RIPK4P57078 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 AC104417.2-201ENST00000562989 1793 ntBASIC25.43■■□□□ 1.66
RIPK4P57078 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC25.43■■□□□ 1.66
RIPK4P57078 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC25.43■■□□□ 1.66
RIPK4P57078 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
RIPK4P57078 ZNF815P-204ENST00000434898 1737 ntBASIC25.43■■□□□ 1.66
RIPK4P57078 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC25.43■■□□□ 1.66
RIPK4P57078 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
RIPK4P57078 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
RIPK4P57078 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
RIPK4P57078 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
RIPK4P57078 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC25.42■■□□□ 1.66
RIPK4P57078 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms