Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TPM1P09493 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
TPM1P09493 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TPM1P09493 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
TPM1P09493 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TPM1P09493 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TPM1P09493 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
TPM1P09493 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
TPM1P09493 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.37■■□□□ 1.01
TPM1P09493 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.37■■□□□ 1.01
TPM1P09493 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.37■■□□□ 1.01
TPM1P09493 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TPM1P09493 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TPM1P09493 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TPM1P09493 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TPM1P09493 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.36■■□□□ 1.01
TPM1P09493 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
TPM1P09493 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.36■■□□□ 1.01
TPM1P09493 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 AC023632.3-201ENST00000521633 145 ntBASIC21.36■■□□□ 1.01
TPM1P09493 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.36■■□□□ 1.01
TPM1P09493 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.36■■□□□ 1.01
TPM1P09493 NTF6G-201ENST00000591094 616 ntBASIC21.36■■□□□ 1.01
TPM1P09493 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC21.36■■□□□ 1.01
TPM1P09493 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TPM1P09493 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TPM1P09493 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.35■■□□□ 1.01
TPM1P09493 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.35■■□□□ 1.01
TPM1P09493 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.35■■□□□ 1.01
TPM1P09493 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TPM1P09493 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.34■■□□□ 1.01
TPM1P09493 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TPM1P09493 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TPM1P09493 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.34■■□□□ 1.01
TPM1P09493 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.34■■□□□ 1.01
TPM1P09493 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
TPM1P09493 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TPM1P09493 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms