Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.84■■□□□ 1.41
COL4A1P02462 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
COL4A1P02462 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC23.84■■□□□ 1.41
COL4A1P02462 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.84■■□□□ 1.41
COL4A1P02462 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.84■■□□□ 1.41
COL4A1P02462 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC23.84■■□□□ 1.41
COL4A1P02462 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 BX664615.1-201ENST00000443558 458 ntBASIC23.84■■□□□ 1.41
COL4A1P02462 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.84■■□□□ 1.41
COL4A1P02462 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A1P02462 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.84■■□□□ 1.41
COL4A1P02462 AL157384.1-201ENST00000445995 2473 ntBASIC23.83■■□□□ 1.41
COL4A1P02462 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.83■■□□□ 1.41
COL4A1P02462 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 RNF152P1-201ENST00000397754 604 ntBASIC23.83■■□□□ 1.41
COL4A1P02462 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 UPK3BP1-201ENST00000428678 509 ntBASIC23.83■■□□□ 1.41
COL4A1P02462 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 COX11P1-201ENST00000489116 835 ntBASIC23.83■■□□□ 1.41
COL4A1P02462 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
COL4A1P02462 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.83■■□□□ 1.41
COL4A1P02462 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
COL4A1P02462 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A1P02462 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
COL4A1P02462 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.4
COL4A1P02462 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.83■■□□□ 1.4
COL4A1P02462 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL4A1P02462 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
COL4A1P02462 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.83■■□□□ 1.4
COL4A1P02462 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC23.83■■□□□ 1.4
COL4A1P02462 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.83■■□□□ 1.4
COL4A1P02462 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A1P02462 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC23.82■■□□□ 1.4
COL4A1P02462 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.82■■□□□ 1.4
COL4A1P02462 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
COL4A1P02462 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A1P02462 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A1P02462 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A1P02462 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.82■■□□□ 1.4
COL4A1P02462 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
COL4A1P02462 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
COL4A1P02462 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A1P02462 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
COL4A1P02462 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A1P02462 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A1P02462 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 COPE-203ENST00000351079 907 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC23.81■■□□□ 1.4
COL4A1P02462 TSPY17P-201ENST00000450329 467 ntBASIC23.81■■□□□ 1.4
COL4A1P02462 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A1P02462 CA15P1-201ENST00000481698 905 ntBASIC23.81■■□□□ 1.4
COL4A1P02462 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A1P02462 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 AC008622.2-201ENST00000617006 1229 ntBASIC23.81■■□□□ 1.4
COL4A1P02462 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A1P02462 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A1P02462 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
COL4A1P02462 TSPY5P-201ENST00000426936 936 ntBASIC23.8■■□□□ 1.4
COL4A1P02462 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.8■■□□□ 1.4
COL4A1P02462 FAM86EP-206ENST00000510506 987 ntBASIC23.8■■□□□ 1.4
COL4A1P02462 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A1P02462 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A1P02462 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
COL4A1P02462 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A1P02462 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
COL4A1P02462 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A1P02462 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.8■■□□□ 1.4
COL4A1P02462 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.8■■□□□ 1.4
COL4A1P02462 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.8■■□□□ 1.4
COL4A1P02462 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms