Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHOX2O60902 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.47■□□□□ 0.71
SHOX2O60902 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.47■□□□□ 0.71
SHOX2O60902 KRT8P17-201ENST00000453110 1448 ntBASIC19.47■□□□□ 0.71
SHOX2O60902 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHOX2O60902 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SHOX2O60902 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHOX2O60902 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SHOX2O60902 ANO7L1-203ENST00000602586 1720 ntBASIC19.46■□□□□ 0.71
SHOX2O60902 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.46■□□□□ 0.71
SHOX2O60902 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.46■□□□□ 0.71
SHOX2O60902 AL136116.3-201ENST00000402907 1138 ntBASIC19.46■□□□□ 0.71
SHOX2O60902 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.46■□□□□ 0.71
SHOX2O60902 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.46■□□□□ 0.71
SHOX2O60902 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.46■□□□□ 0.71
SHOX2O60902 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.46■□□□□ 0.71
SHOX2O60902 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.46■□□□□ 0.71
SHOX2O60902 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SHOX2O60902 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHOX2O60902 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 MIR4767-201ENST00000582827 78 ntBASIC19.45■□□□□ 0.7
SHOX2O60902 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.45■□□□□ 0.7
SHOX2O60902 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.45■□□□□ 0.7
SHOX2O60902 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.45■□□□□ 0.7
SHOX2O60902 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.45■□□□□ 0.7
SHOX2O60902 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHOX2O60902 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
SHOX2O60902 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.45■□□□□ 0.7
SHOX2O60902 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SHOX2O60902 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.44■□□□□ 0.7
SHOX2O60902 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.44■□□□□ 0.7
SHOX2O60902 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 GNAS-203ENST00000306120 1878 ntBASIC19.44■□□□□ 0.7
SHOX2O60902 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.44■□□□□ 0.7
SHOX2O60902 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.44■□□□□ 0.7
SHOX2O60902 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.44■□□□□ 0.7
SHOX2O60902 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.44■□□□□ 0.7
SHOX2O60902 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHOX2O60902 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms