Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 GRAMD4P4-201ENST00000613563 1115 ntBASIC14.2□□□□□ -0.14
SMKR1H3BMG3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 AL358852.1-201ENST00000623174 1268 ntBASIC14.2□□□□□ -0.14
SMKR1H3BMG3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 AP001271.2-201ENST00000624018 1556 ntBASIC14.2□□□□□ -0.14
SMKR1H3BMG3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC14.2□□□□□ -0.14
SMKR1H3BMG3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KRT16P6-202ENST00000425692 1426 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KRT8P17-201ENST00000453110 1448 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L2-201ENST00000561772 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L6-201ENST00000626483 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L1-201ENST00000627662 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L8-201ENST00000629013 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L3-201ENST00000630187 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L7-201ENST00000630678 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 DUX4L5-201ENST00000630834 1275 ntBASIC14.19□□□□□ -0.14
SMKR1H3BMG3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
SMKR1H3BMG3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 RBM17P2-201ENST00000616397 1405 ntBASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AC104187.1-201ENST00000607510 612 ntBASIC14.18□□□□□ -0.14
SMKR1H3BMG3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms