Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 MIR6724-3-201ENST00000622482 92 ntBASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.33■□□□□ 0.04
RBFOX3A6NFN3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AP001271.2-201ENST00000624018 1556 ntBASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AC009053.2-201ENST00000563701 2365 ntBASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AC141586.3-201ENST00000562166 1838 ntBASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 POU5F1P4-201ENST00000413175 1085 ntBASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AK3-203ENST00000447596 705 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.32■□□□□ 0.04
RBFOX3A6NFN3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 AC008175.2-201ENST00000612840 297 ntBASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RBFOX3A6NFN3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
RBFOX3A6NFN3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms