Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 AC116562.4-201ENST00000641316 2276 ntBASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRAV4A0A0B4J268 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AC092368.3-202ENST00000574180 1591 ntBASIC14□□□□□ -0.17
TRAV4A0A0B4J268 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 MAP2K4P1-201ENST00000438453 1195 ntBASIC14□□□□□ -0.17
TRAV4A0A0B4J268 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AL138781.1-201ENST00000566567 1274 ntBASIC14□□□□□ -0.17
TRAV4A0A0B4J268 MYC-209ENST00000641252 345 ntBASIC14□□□□□ -0.17
TRAV4A0A0B4J268 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
TRAV4A0A0B4J268 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 GATS-209ENST00000454084 1030 ntTSL 3 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 AC060766.5-201ENST00000590539 871 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 GXYLT1P5-201ENST00000614548 1189 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 AL109923.1-201ENST00000618799 583 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 AC006557.6-201ENST00000623071 864 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 TFP1-202ENST00000475455 1573 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 AC090340.1-201ENST00000620778 4980 ntBASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
TRAV4A0A0B4J268 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms