Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 AFG3L1P-217ENST00000557444 2447 ntBASIC15.32■□□□□ 0.04
TRAV41A0A0B4J266 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV41A0A0B4J266 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV41A0A0B4J266 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 AC125437.2-201ENST00000625180 2167 ntBASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 MIR718-201ENST00000390190 70 ntBASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV41A0A0B4J266 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms