Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 NIFKP7-201ENST00000503365 834 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC083829.1-201ENST00000503756 657 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC091951.3-201ENST00000504093 246 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 OR51K1P-201ENST00000510214 950 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC119751.5-201ENST00000514077 770 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RN7SKP99-201ENST00000517028 307 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 MRPS36P3-201ENST00000519284 130 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.33□□□□□ -1.72
HOXA1P49639 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 AC023813.2-201ENST00000564321 469 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 SS18L2P2-201ENST00000583960 235 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 CCDC58P3-201ENST00000590792 430 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 AL139344.1-201ENST00000605228 195 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC231759.1-201ENST00000616455 597 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AP005431.1-201ENST00000618479 319 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AL121895.2-201ENST00000619558 447 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 RMST_9.1-201ENST00000619945 193 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 AC138907.10-201ENST00000623708 983 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXA1P49639 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 SRRM1P3-201ENST00000426911 2678 ntBASIC4.33□□□□□ -1.72
HOXA1P49639 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.33□□□□□ -1.72
HOXA1P49639 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXA1P49639 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 RLIMP2-201ENST00000427891 1563 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.32□□□□□ -1.72
HOXA1P49639 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA1P49639 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 AC111188.2-201ENST00000529697 1387 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 MAPK10-320ENST00000641462 6696 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA1P49639 RNA5SP131-201ENST00000365452 119 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA1P49639 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 MIR320B1-201ENST00000390209 79 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HOXA1P49639 AC105402.1-201ENST00000413336 545 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 AL590609.2-201ENST00000421430 368 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 HIGD1AP12-201ENST00000427832 281 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 FABP7P2-201ENST00000429946 379 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 NANOGP2-201ENST00000435391 727 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 HMGB1P45-201ENST00000435986 653 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA1P49639 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 AL353093.1-201ENST00000441292 436 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA1P49639 AL450996.1-201ENST00000445574 1202 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 AC005002.1-201ENST00000447458 540 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 VN1R40P-201ENST00000455196 941 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC079203.1-201ENST00000487972 404 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA1P49639 RNA5SP497-201ENST00000516081 97 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 SCARNA16.4-201ENST00000516956 187 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC022360.1-201ENST00000521058 340 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 UBTFL10-201ENST00000528532 562 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 OR11H3P-201ENST00000554547 982 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 CYP2C60P-201ENST00000566088 139 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 MIR548Y-201ENST00000582739 110 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AC015688.2-201ENST00000584523 262 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 ELOCP28-201ENST00000590044 317 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.32□□□□□ -1.72
HOXA1P49639 VN1R78P-201ENST00000597393 564 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 NIFKP6-201ENST00000598115 845 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HOXA1P49639 AL365181.4-201ENST00000609800 547 ntBASIC4.32□□□□□ -1.72
HOXA1P49639 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.32□□□□□ -1.72
HOXA1P49639 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.32□□□□□ -1.72
HOXA1P49639 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.32□□□□□ -1.72
HOXA1P49639 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms