RNA–Protein interactions for RNA: ENST00000446579.1

LINC00440-201, long intergenic non-protein coding RNA 440, humanhuman

TSL 5 BASIC

Gene LINC00440, Length 734 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00440-201ENST00000446579 AEBP2Q6ZN18 517 aaPredicted RBP26.72■■□□□ 1.87
LINC00440-201ENST00000446579 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.66
LINC00440-201ENST00000446579 SENP3Q9H4L4 574 aaPredicted RBP22.82■■□□□ 1.24
LINC00440-201ENST00000446579 PHF23Q9BUL5 403 aaPredicted RBP22.54■■□□□ 1.2
LINC00440-201ENST00000446579 FOXD1Q16676 465 aa21.25■□□□□ 0.99
LINC00440-201ENST00000446579 PLPPR3Q6T4P5 718 aa20.4■□□□□ 0.86
LINC00440-201ENST00000446579 PIAS4Q8N2W9 510 aaPredicted RBP19.94■□□□□ 0.78
LINC00440-201ENST00000446579 PPP6R1Q9UPN7 881 aa19.92■□□□□ 0.78
LINC00440-201ENST00000446579 ADRA2BP18089 450 aa19.9■□□□□ 0.78
LINC00440-201ENST00000446579 MSH5O43196 834 aa19.87■□□□□ 0.77
LINC00440-201ENST00000446579 POTEDQ86YR6 584 aa19.28■□□□□ 0.68
LINC00440-201ENST00000446579 MAPK8IP2Q13387 824 aaPredicted RBP18.26■□□□□ 0.51
LINC00440-201ENST00000446579 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
LINC00440-201ENST00000446579 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.48
LINC00440-201ENST00000446579 PPP4R3CPQ6ZMV5 832 aa17.9■□□□□ 0.46
LINC00440-201ENST00000446579 CNKSR2Q8WXI2 1034 aa17.54■□□□□ 0.4
LINC00440-201ENST00000446579 DCAF8L1A6NGE4 600 aa17.5■□□□□ 0.39
LINC00440-201ENST00000446579 HOXD11P31277 338 aaPredicted RBP17.41■□□□□ 0.38
LINC00440-201ENST00000446579 RNF216Q9NWF9 866 aaPredicted RBP17.33■□□□□ 0.36
LINC00440-201ENST00000446579 NCBP3Q53F19 620 aaKnown RBP17.26■□□□□ 0.35
LINC00440-201ENST00000446579 CACNB1Q02641 598 aaPredicted RBP17.08■□□□□ 0.32
LINC00440-201ENST00000446579 NPM3O75607 178 aaKnown RBP16.96■□□□□ 0.31
LINC00440-201ENST00000446579 RNF39Q9H2S5 420 aa16.93■□□□□ 0.3
LINC00440-201ENST00000446579 DNAJC5BQ9UF47 199 aa16.74■□□□□ 0.27
LINC00440-201ENST00000446579 KCNA4P22459 653 aa16.72■□□□□ 0.27
LINC00440-201ENST00000446579 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.72■□□□□ 0.27
LINC00440-201ENST00000446579 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
LINC00440-201ENST00000446579 U3KPZ7 1027 aaPredicted RBP16.29■□□□□ 0.2
LINC00440-201ENST00000446579 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
LINC00440-201ENST00000446579 CAPN15O75808 1086 aa16.1■□□□□ 0.17
LINC00440-201ENST00000446579 SPINK5Q9NQ38 1064 aaPredicted RBP16.07■□□□□ 0.16
LINC00440-201ENST00000446579 DSG3P32926 999 aa15.9■□□□□ 0.14
LINC00440-201ENST00000446579 APLP2Q06481 763 aa15.9■□□□□ 0.14
LINC00440-201ENST00000446579 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.88■□□□□ 0.13
LINC00440-201ENST00000446579 HNRNPUL2Q1KMD3 747 aaKnown RBP15.88■□□□□ 0.13
LINC00440-201ENST00000446579 TRHP20396 242 aaPredicted RBP15.87■□□□□ 0.13
LINC00440-201ENST00000446579 SLC4A1APQ9BWU0 796 aaKnown RBP15.83■□□□□ 0.12
LINC00440-201ENST00000446579 SAMD1Q6SPF0 538 aaPredicted RBP15.8■□□□□ 0.12
LINC00440-201ENST00000446579 ZNF219Q9P2Y4 722 aaPredicted RBP15.77■□□□□ 0.12
LINC00440-201ENST00000446579 ABCB7O75027 752 aa15.74■□□□□ 0.11
LINC00440-201ENST00000446579 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
LINC00440-201ENST00000446579 FOXD4L1Q9NU39 408 aa15.58■□□□□ 0.08
LINC00440-201ENST00000446579 POLA2Q14181 598 aa15.42■□□□□ 0.06
LINC00440-201ENST00000446579 ZBTB22O15209 634 aa15.33■□□□□ 0.04
LINC00440-201ENST00000446579 ATF5Q9Y2D1 282 aaPredicted RBP15.33■□□□□ 0.04
LINC00440-201ENST00000446579 RBM42Q9BTD8 480 aaKnown RBP15.2■□□□□ 0.02
LINC00440-201ENST00000446579 POTEHQ6S545 545 aa15.15■□□□□ 0.02
LINC00440-201ENST00000446579 ZBTB12Q9Y330 459 aaPredicted RBP15.08■□□□□ 0
LINC00440-201ENST00000446579 ATXN8OSP0DMR3 200 aa15.05■□□□□ -0
LINC00440-201ENST00000446579 OSCARQ8IYS5 282 aa14.91□□□□□ -0.02
LINC00440-201ENST00000446579 AKT1S1Q96B36 256 aa14.85□□□□□ -0.03
LINC00440-201ENST00000446579 CHRDL2Q6WN34 429 aa14.84□□□□□ -0.03
LINC00440-201ENST00000446579 FBLN2P98095 1184 aa14.79□□□□□ -0.04
LINC00440-201ENST00000446579 EHMT2Q96KQ7 1210 aa14.75□□□□□ -0.05
LINC00440-201ENST00000446579 REM2Q8IYK8 340 aaPredicted RBP14.72□□□□□ -0.05
LINC00440-201ENST00000446579 CSRNP3Q8WYN3 585 aa14.71□□□□□ -0.05
LINC00440-201ENST00000446579 SPDYE2BA6NHP3 402 aa14.61□□□□□ -0.07
LINC00440-201ENST00000446579 SPDYE6P0CI01 402 aa14.61□□□□□ -0.07
LINC00440-201ENST00000446579 SPDYE2Q495Y8 402 aa14.61□□□□□ -0.07
LINC00440-201ENST00000446579 MKRN4PQ13434 485 aaPredicted RBP14.6□□□□□ -0.07
LINC00440-201ENST00000446579 PITPNM1O00562 1244 aa14.56□□□□□ -0.08
LINC00440-201ENST00000446579 ZNF692Q9BU19 519 aaPredicted RBP14.5□□□□□ -0.09
LINC00440-201ENST00000446579 PIP4P2Q8N4L2 257 aa14.49□□□□□ -0.09
LINC00440-201ENST00000446579 CLEC11AQ9Y240 323 aa14.42□□□□□ -0.1
LINC00440-201ENST00000446579 FXR2P51116 673 aaKnown RBP eCLIP14.38□□□□□ -0.11
LINC00440-201ENST00000446579 SSUH2Q9Y2M2 353 aa14.38□□□□□ -0.11
LINC00440-201ENST00000446579 SPDYE1Q8NFV5 336 aaPredicted RBP14.37□□□□□ -0.11
LINC00440-201ENST00000446579 HAX1O00165 279 aa14.29□□□□□ -0.12
LINC00440-201ENST00000446579 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
LINC00440-201ENST00000446579 PRKAR2AP13861 404 aaKnown RBP14.22□□□□□ -0.13
LINC00440-201ENST00000446579 SP7Q8TDD2 431 aaPredicted RBP14.22□□□□□ -0.13
LINC00440-201ENST00000446579 PRR29P0C7W0 189 aa14.15□□□□□ -0.14
LINC00440-201ENST00000446579 CHADLQ6NUI6 762 aa14.09□□□□□ -0.15
LINC00440-201ENST00000446579 EVX2Q03828 476 aa14.03□□□□□ -0.16
LINC00440-201ENST00000446579 SPDYE4A6NLX3 237 aa14.01□□□□□ -0.17
LINC00440-201ENST00000446579 C19orf67A6NJJ6 358 aa13.92□□□□□ -0.18
LINC00440-201ENST00000446579 STAG3Q9UJ98 1225 aa13.89□□□□□ -0.19
LINC00440-201ENST00000446579 FARP1Q9Y4F1 1045 aaPredicted RBP13.85□□□□□ -0.19
LINC00440-201ENST00000446579 CD44P16070 742 aaKnown RBP13.78□□□□□ -0.2
LINC00440-201ENST00000446579 GABBR2O75899 941 aa13.74□□□□□ -0.21
LINC00440-201ENST00000446579 CREBZFQ9NS37 354 aa13.74□□□□□ -0.21
LINC00440-201ENST00000446579 ZRANB1Q9UGI0 708 aa13.61□□□□□ -0.23
LINC00440-201ENST00000446579 NPM1P06748 294 aaKnown RBP eCLIP13.55□□□□□ -0.24
LINC00440-201ENST00000446579 PROM2Q8N271 834 aa13.55□□□□□ -0.24
LINC00440-201ENST00000446579 PAK3O75914 559 aaPredicted RBP13.54□□□□□ -0.24
LINC00440-201ENST00000446579 CLCN6P51797 869 aa13.5□□□□□ -0.25
LINC00440-201ENST00000446579 ZNF579Q8NAF0 562 aaKnown RBP13.5□□□□□ -0.25
LINC00440-201ENST00000446579 MNX1P50219 401 aaPredicted RBP13.47□□□□□ -0.25
LINC00440-201ENST00000446579 DCBLD2Q96PD2 775 aa13.45□□□□□ -0.26
LINC00440-201ENST00000446579 PLEKHG5O94827 1062 aa13.41□□□□□ -0.26
LINC00440-201ENST00000446579 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
LINC00440-201ENST00000446579 FKBP8Q14318 412 aa13.41□□□□□ -0.26
LINC00440-201ENST00000446579 MIER1Q8N108 512 aa13.41□□□□□ -0.26
LINC00440-201ENST00000446579 PHF12Q96QT6 1004 aa13.41□□□□□ -0.26
LINC00440-201ENST00000446579 GALR2O43603 387 aaPredicted RBP13.38□□□□□ -0.27
LINC00440-201ENST00000446579 LHX8Q68G74 356 aa13.36□□□□□ -0.27
LINC00440-201ENST00000446579 TSPYL2Q9H2G4 693 aaPredicted RBP13.35□□□□□ -0.27
LINC00440-201ENST00000446579 PLCD3Q8N3E9 789 aa13.33□□□□□ -0.28
LINC00440-201ENST00000446579 MS4A3Q96HJ5 214 aa13.22□□□□□ -0.29
LINC00440-201ENST00000446579 CCDC61Q9Y6R9 512 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms