Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CDH18-203ENST00000502796 2386 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 AL121949.2-201ENST00000403446 1548 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 KDM4C-205ENST00000428870 3039 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 GATAD2B-203ENST00000634408 1825 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 AP003471.1-202ENST00000319051 1988 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 VPS41-202ENST00000310301 5903 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 EFCAB1-201ENST00000262103 2051 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 SNORD113-1-201ENST00000365321 69 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AL136131.1-201ENST00000406079 803 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC7.57□□□□□ -1.2
COL9A1P20849 CEP57L1P1-201ENST00000430943 1201 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC7.57□□□□□ -1.2
COL9A1P20849 RNU7-27P-201ENST00000459281 62 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 RPL34P34-201ENST00000465389 354 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 RPL23AP71-201ENST00000470966 469 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC040975.1-201ENST00000472104 316 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC005017.1-201ENST00000482002 490 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC090453.1-201ENST00000495560 436 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC7.57□□□□□ -1.2
COL9A1P20849 MTND1P19-201ENST00000511780 315 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 HMGN1P9-201ENST00000515212 298 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 SNORA81.3-201ENST00000517283 198 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC7.57□□□□□ -1.2
COL9A1P20849 IGHV3-76-201ENST00000522465 295 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC018552.3-201ENST00000567416 561 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC002310.3-201ENST00000569728 723 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC010547.6-201ENST00000571789 193 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 RN7SL835P-201ENST00000579920 262 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC7.57□□□□□ -1.2
COL9A1P20849 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 AL353997.4-201ENST00000586196 166 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC005518.2-201ENST00000603254 282 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AL121992.2-201ENST00000606262 256 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 MIR6826-201ENST00000617808 98 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 AC073488.8-201ENST00000631952 757 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 C4BPA-201ENST00000367070 2243 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 AL359854.1-201ENST00000614203 1594 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
COL9A1P20849 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
COL9A1P20849 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 AL136146.1-201ENST00000529830 1667 ntBASIC7.57□□□□□ -1.2
COL9A1P20849 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 PTCHD4-201ENST00000339488 2850 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
COL9A1P20849 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL9A1P20849 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.56□□□□□ -1.2
COL9A1P20849 PTPDC1-204ENST00000620992 4437 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
COL9A1P20849 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 OR55B1P-203ENST00000641518 2602 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC7.56□□□□□ -1.2
COL9A1P20849 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.56□□□□□ -1.2
COL9A1P20849 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.56□□□□□ -1.2
COL9A1P20849 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
COL9A1P20849 DGKG-202ENST00000344484 3445 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
COL9A1P20849 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.56□□□□□ -1.2
COL9A1P20849 Y_RNA.22-201ENST00000362492 102 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 RNU6-770P-201ENST00000363929 105 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 RNA5SP394-201ENST00000364216 119 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 MIR558-201ENST00000384920 94 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 AC026310.1-201ENST00000396004 378 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 RPA3-204ENST00000406109 434 ntTSL 3 BASIC7.56□□□□□ -1.2
COL9A1P20849 AL034374.1-201ENST00000406329 351 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 MIR1272-201ENST00000408106 129 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC7.56□□□□□ -1.2
COL9A1P20849 AC012075.1-201ENST00000436549 580 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL9A1P20849 AL031663.1-201ENST00000437445 219 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 OR7E116P-201ENST00000448529 957 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 AC073850.1-201ENST00000449243 255 ntBASIC7.56□□□□□ -1.2
COL9A1P20849 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms