RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 NISCHQ9Y2I1 1504 aa15.01□□□□□ -0.01
VPS41-202ENST00000310301 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
VPS41-202ENST00000310301 ABCC9O60706 1549 aa13.37□□□□□ -0.27
VPS41-202ENST00000310301 SHROOM4Q9ULL8 1493 aa13.22□□□□□ -0.29
VPS41-202ENST00000310301 PELP1Q8IZL8 1130 aaKnown RBP13.2□□□□□ -0.3
VPS41-202ENST00000310301 FAM9AQ8IZU1 332 aaPredicted RBP13.1□□□□□ -0.31
VPS41-202ENST00000310301 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
VPS41-202ENST00000310301 PABPN1Q86U42 306 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS41-202ENST00000310301 CCDC180Q9P1Z9 1646 aa12.86□□□□□ -0.35
VPS41-202ENST00000310301 MYT1Q01538 1121 aa12.77□□□□□ -0.37
VPS41-202ENST00000310301 ERICH6Q7L0X2 663 aa12.74□□□□□ -0.37
VPS41-202ENST00000310301 EHMT2Q96KQ7 1210 aa12.72□□□□□ -0.37
VPS41-202ENST00000310301 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
VPS41-202ENST00000310301 CENPBP07199 599 aaPredicted RBP12.63□□□□□ -0.39
VPS41-202ENST00000310301 PCGF6Q9BYE7 350 aa12.58□□□□□ -0.4
VPS41-202ENST00000310301 CCER1Q8TC90 406 aaPredicted RBP12.58□□□□□ -0.4
VPS41-202ENST00000310301 NACADO15069 1562 aa12.54□□□□□ -0.4
VPS41-202ENST00000310301 APLP2Q06481 763 aa12.51□□□□□ -0.41
VPS41-202ENST00000310301 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
VPS41-202ENST00000310301 ZEB1P37275 1124 aaPredicted RBP12.41□□□□□ -0.42
VPS41-202ENST00000310301 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
VPS41-202ENST00000310301 TTBK1Q5TCY1 1321 aaPredicted RBP12.37□□□□□ -0.43
VPS41-202ENST00000310301 ZCCHC6Q5VYS8 1495 aaKnown RBP12.36□□□□□ -0.43
VPS41-202ENST00000310301 YTHDC1Q96MU7 727 aaKnown RBP12.32□□□□□ -0.44
VPS41-202ENST00000310301 NEFLP07196 543 aa12.29□□□□□ -0.44
VPS41-202ENST00000310301 ATP1B4Q9UN42 357 aaPredicted RBP12.28□□□□□ -0.44
VPS41-202ENST00000310301 FBLN2P98095 1184 aa12.24□□□□□ -0.45
VPS41-202ENST00000310301 UBTFP17480 764 aaKnown RBP12.22□□□□□ -0.45
VPS41-202ENST00000310301 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
VPS41-202ENST00000310301 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
VPS41-202ENST00000310301 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
VPS41-202ENST00000310301 MYT1LQ9UL68 1186 aa12.15□□□□□ -0.46
VPS41-202ENST00000310301 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
VPS41-202ENST00000310301 DCAF1Q9Y4B6 1507 aa12.13□□□□□ -0.47
VPS41-202ENST00000310301 MYO15BQ96JP2 1530 aa12.07□□□□□ -0.48
VPS41-202ENST00000310301 NPM1P06748 294 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS41-202ENST00000310301 BAZ1BQ9UIG0 1483 aaKnown RBP12.01□□□□□ -0.49
VPS41-202ENST00000310301 HRCP23327 699 aa12.01□□□□□ -0.49
VPS41-202ENST00000310301 DAXXQ9UER7 740 aaPredicted RBP12.01□□□□□ -0.49
VPS41-202ENST00000310301 CECR2Q9BXF3 1484 aa11.97□□□□□ -0.49
VPS41-202ENST00000310301 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
VPS41-202ENST00000310301 TRIM26Q12899 539 aaPredicted RBP11.89□□□□□ -0.51
VPS41-202ENST00000310301 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
VPS41-202ENST00000310301 PDS5BQ9NTI5 1447 aa11.89□□□□□ -0.51
VPS41-202ENST00000310301 PPARGC1BQ86YN6 1023 aaKnown RBP11.87□□□□□ -0.51
VPS41-202ENST00000310301 RTL5Q5HYW3 569 aaPredicted RBP11.86□□□□□ -0.51
VPS41-202ENST00000310301 SMARCA2P51531 1590 aa11.86□□□□□ -0.51
VPS41-202ENST00000310301 CDK11AQ9UQ88 783 aaPredicted RBP11.8□□□□□ -0.52
VPS41-202ENST00000310301 ESF1Q9H501 851 aaKnown RBP11.77□□□□□ -0.53
VPS41-202ENST00000310301 ZNF316A6NFI3 1004 aaPredicted RBP11.73□□□□□ -0.53
VPS41-202ENST00000310301 TRHP20396 242 aaPredicted RBP11.71□□□□□ -0.53
VPS41-202ENST00000310301 DIEXFQ68CQ4 756 aaKnown RBP11.69□□□□□ -0.54
VPS41-202ENST00000310301 GTF3C3Q9Y5Q9 886 aa11.68□□□□□ -0.54
VPS41-202ENST00000310301 POLR3GLQ9BT43 218 aa11.67□□□□□ -0.54
VPS41-202ENST00000310301 RSF1Q96T23 1441 aaPredicted RBP11.67□□□□□ -0.54
VPS41-202ENST00000310301 CSRNP3Q8WYN3 585 aa11.64□□□□□ -0.55
VPS41-202ENST00000310301 CADPSQ9ULU8 1353 aa11.64□□□□□ -0.55
VPS41-202ENST00000310301 CNGB1Q14028 1251 aaPredicted RBP11.62□□□□□ -0.55
VPS41-202ENST00000310301 BCANQ96GW7 911 aa11.61□□□□□ -0.55
VPS41-202ENST00000310301 CHIC1Q5VXU3 224 aa11.61□□□□□ -0.55
VPS41-202ENST00000310301 CLSPNQ9HAW4 1339 aa11.6□□□□□ -0.55
VPS41-202ENST00000310301 ATAD2BQ9ULI0 1458 aa11.6□□□□□ -0.55
VPS41-202ENST00000310301 ITGAEP38570 1179 aa11.59□□□□□ -0.55
VPS41-202ENST00000310301 OSCARQ8IYS5 282 aa11.58□□□□□ -0.56
VPS41-202ENST00000310301 EIF4G1Q04637 1599 aaKnown RBP11.58□□□□□ -0.56
VPS41-202ENST00000310301 P3H3Q8IVL6 736 aa11.57□□□□□ -0.56
VPS41-202ENST00000310301 CEP164Q9UPV0 1460 aa11.57□□□□□ -0.56
VPS41-202ENST00000310301 WRNQ14191 1432 aaPredicted RBP eCLIP11.55□□□□□ -0.56
VPS41-202ENST00000310301 LOC105371045A0A1W2PR82 267 aa11.54□□□□□ -0.56
VPS41-202ENST00000310301 ARID3CA6NKF2 412 aa11.53□□□□□ -0.56
VPS41-202ENST00000310301 NCAPD3P42695 1498 aa11.53□□□□□ -0.56
VPS41-202ENST00000310301 ABCC8Q09428 1581 aa11.53□□□□□ -0.56
VPS41-202ENST00000310301 KIF27Q86VH2 1401 aa11.52□□□□□ -0.56
VPS41-202ENST00000310301 EIF5BO60841 1220 aaKnown RBP11.48□□□□□ -0.57
VPS41-202ENST00000310301 ZNF777Q9ULD5 760 aaPredicted RBP11.48□□□□□ -0.57
VPS41-202ENST00000310301 PLEKHD1A6NEE1 506 aa11.48□□□□□ -0.57
VPS41-202ENST00000310301 MROH2BQ7Z745 1585 aa11.48□□□□□ -0.57
VPS41-202ENST00000310301 CC2D2AQ9P2K1 1620 aa11.47□□□□□ -0.57
VPS41-202ENST00000310301 SOGA1O94964 1423 aa11.47□□□□□ -0.57
VPS41-202ENST00000310301 FAM50AQ14320 339 aaKnown RBP11.47□□□□□ -0.57
VPS41-202ENST00000310301 DNAJC5BQ9UF47 199 aa11.46□□□□□ -0.57
VPS41-202ENST00000310301 SMARCA4P51532 1647 aa11.46□□□□□ -0.57
VPS41-202ENST00000310301 ACIN1Q9UKV3 1341 aaKnown RBP11.44□□□□□ -0.58
VPS41-202ENST00000310301 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
VPS41-202ENST00000310301 ARID4BQ4LE39 1312 aaPredicted RBP11.43□□□□□ -0.58
VPS41-202ENST00000310301 FANCD2Q9BXW9 1451 aa11.43□□□□□ -0.58
VPS41-202ENST00000310301 CARMIL2Q6F5E8 1435 aa11.43□□□□□ -0.58
VPS41-202ENST00000310301 STAG3Q9UJ98 1225 aa11.43□□□□□ -0.58
VPS41-202ENST00000310301 PLPPR3Q6T4P5 718 aa11.42□□□□□ -0.58
VPS41-202ENST00000310301 TOP2AP11388 1531 aaKnown RBP11.41□□□□□ -0.58
VPS41-202ENST00000310301 EEA1Q15075 1411 aa11.41□□□□□ -0.58
VPS41-202ENST00000310301 AEBP2Q6ZN18 517 aaPredicted RBP11.4□□□□□ -0.59
VPS41-202ENST00000310301 TRIM52Q96A61 297 aa11.39□□□□□ -0.59
VPS41-202ENST00000310301 CUX2O14529 1486 aa11.39□□□□□ -0.59
VPS41-202ENST00000310301 CCDC88BA6NC98 1476 aa11.38□□□□□ -0.59
VPS41-202ENST00000310301 TSPY4P0CV99 314 aa11.37□□□□□ -0.59
VPS41-202ENST00000310301 TSPY10P0CW01 314 aa11.37□□□□□ -0.59
VPS41-202ENST00000310301 TDRD9Q8NDG6 1382 aaKnown RBP11.37□□□□□ -0.59
VPS41-202ENST00000310301 GLIPR1L2Q4G1C9 344 aa11.36□□□□□ -0.59
VPS41-202ENST00000310301 CYB5RLQ6IPT4 315 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 347.3 ms