RNA–Protein interactions for RNA: ENST00000620992.4

PTPDC1-204, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPDC1, Length 4,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-204ENST00000620992 NISCHQ9Y2I1 1504 aa16.16■□□□□ 0.18
PTPDC1-204ENST00000620992 DCAF8L2P0C7V8 631 aa15.15■□□□□ 0.02
PTPDC1-204ENST00000620992 SHROOM4Q9ULL8 1493 aa14.21□□□□□ -0.13
PTPDC1-204ENST00000620992 SUPT5HO00267 1087 aaKnown RBP14.06□□□□□ -0.16
PTPDC1-204ENST00000620992 EHMT2Q96KQ7 1210 aa13.97□□□□□ -0.17
PTPDC1-204ENST00000620992 ZCCHC6Q5VYS8 1495 aaKnown RBP13.65□□□□□ -0.22
PTPDC1-204ENST00000620992 CCDC180Q9P1Z9 1646 aa13.54□□□□□ -0.24
PTPDC1-204ENST00000620992 CHIC1Q5VXU3 224 aa13.49□□□□□ -0.25
PTPDC1-204ENST00000620992 FAM9AQ8IZU1 332 aaPredicted RBP13.39□□□□□ -0.27
PTPDC1-204ENST00000620992 MYO15BQ96JP2 1530 aa13.37□□□□□ -0.27
PTPDC1-204ENST00000620992 TTBK1Q5TCY1 1321 aaPredicted RBP13.37□□□□□ -0.27
PTPDC1-204ENST00000620992 PCGF6Q9BYE7 350 aa13.33□□□□□ -0.28
PTPDC1-204ENST00000620992 RANGAP1P46060 587 aaPredicted RBP13.3□□□□□ -0.28
PTPDC1-204ENST00000620992 HRCP23327 699 aa13.25□□□□□ -0.29
PTPDC1-204ENST00000620992 LOC105371045A0A1W2PR82 267 aa13.21□□□□□ -0.3
PTPDC1-204ENST00000620992 DCAF1Q9Y4B6 1507 aa13.11□□□□□ -0.31
PTPDC1-204ENST00000620992 PPARGC1BQ86YN6 1023 aaKnown RBP13.08□□□□□ -0.32
PTPDC1-204ENST00000620992 ATP1B4Q9UN42 357 aaPredicted RBP13.01□□□□□ -0.33
PTPDC1-204ENST00000620992 APLP2Q06481 763 aa12.99□□□□□ -0.33
PTPDC1-204ENST00000620992 TRIM41Q8WV44 630 aa12.97□□□□□ -0.33
PTPDC1-204ENST00000620992 SCRIBQ14160 1630 aa12.96□□□□□ -0.33
PTPDC1-204ENST00000620992 TRIM26Q12899 539 aaPredicted RBP12.93□□□□□ -0.34
PTPDC1-204ENST00000620992 RSF1Q96T23 1441 aaPredicted RBP12.88□□□□□ -0.35
PTPDC1-204ENST00000620992 ABCC9O60706 1549 aa12.88□□□□□ -0.35
PTPDC1-204ENST00000620992 RB1CC1Q8TDY2 1594 aa12.76□□□□□ -0.37
PTPDC1-204ENST00000620992 UBTFP17480 764 aaKnown RBP12.74□□□□□ -0.37
PTPDC1-204ENST00000620992 CECR2Q9BXF3 1484 aa12.69□□□□□ -0.38
PTPDC1-204ENST00000620992 ZEB1P37275 1124 aaPredicted RBP12.68□□□□□ -0.38
PTPDC1-204ENST00000620992 MROH2BQ7Z745 1585 aa12.62□□□□□ -0.39
PTPDC1-204ENST00000620992 NACADO15069 1562 aa12.6□□□□□ -0.39
PTPDC1-204ENST00000620992 WIZO95785 1651 aa12.55□□□□□ -0.4
PTPDC1-204ENST00000620992 ITGAEP38570 1179 aa12.53□□□□□ -0.4
PTPDC1-204ENST00000620992 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.53□□□□□ -0.4
PTPDC1-204ENST00000620992 HNRNPUL2Q1KMD3 747 aaKnown RBP12.53□□□□□ -0.4
PTPDC1-204ENST00000620992 CCER1Q8TC90 406 aaPredicted RBP12.52□□□□□ -0.4
PTPDC1-204ENST00000620992 PABPN1Q86U42 306 aaKnown RBP eCLIP12.52□□□□□ -0.41
PTPDC1-204ENST00000620992 MYT1LQ9UL68 1186 aa12.51□□□□□ -0.41
PTPDC1-204ENST00000620992 CNGB1Q14028 1251 aaPredicted RBP12.48□□□□□ -0.41
PTPDC1-204ENST00000620992 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
PTPDC1-204ENST00000620992 ABCC8Q09428 1581 aa12.38□□□□□ -0.43
PTPDC1-204ENST00000620992 YTHDC1Q96MU7 727 aaKnown RBP12.36□□□□□ -0.43
PTPDC1-204ENST00000620992 POLR3GLQ9BT43 218 aa12.36□□□□□ -0.43
PTPDC1-204ENST00000620992 CCDC88BA6NC98 1476 aa12.35□□□□□ -0.43
PTPDC1-204ENST00000620992 SOGA1O94964 1423 aa12.31□□□□□ -0.44
PTPDC1-204ENST00000620992 CSRNP3Q8WYN3 585 aa12.3□□□□□ -0.44
PTPDC1-204ENST00000620992 SCAF1Q9H7N4 1312 aaKnown RBP12.29□□□□□ -0.44
PTPDC1-204ENST00000620992 TOP2AP11388 1531 aaKnown RBP12.29□□□□□ -0.44
PTPDC1-204ENST00000620992 CEP162Q5TB80 1403 aa12.29□□□□□ -0.44
PTPDC1-204ENST00000620992 SMARCA4P51532 1647 aa12.27□□□□□ -0.45
PTPDC1-204ENST00000620992 DIEXFQ68CQ4 756 aaKnown RBP12.25□□□□□ -0.45
PTPDC1-204ENST00000620992 SMARCA2P51531 1590 aa12.24□□□□□ -0.45
PTPDC1-204ENST00000620992 EIF4G1Q04637 1599 aaKnown RBP12.23□□□□□ -0.45
PTPDC1-204ENST00000620992 RUSC2Q8N2Y8 1516 aa12.22□□□□□ -0.45
PTPDC1-204ENST00000620992 FBLN2P98095 1184 aa12.22□□□□□ -0.45
PTPDC1-204ENST00000620992 PELP1Q8IZL8 1130 aaKnown RBP12.21□□□□□ -0.45
PTPDC1-204ENST00000620992 TNIKQ9UKE5 1360 aa12.21□□□□□ -0.45
PTPDC1-204ENST00000620992 ARID3CA6NKF2 412 aa12.17□□□□□ -0.46
PTPDC1-204ENST00000620992 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
PTPDC1-204ENST00000620992 NEUROD1Q13562 356 aa12.16□□□□□ -0.46
PTPDC1-204ENST00000620992 CENPBP07199 599 aaPredicted RBP12.15□□□□□ -0.46
PTPDC1-204ENST00000620992 EEA1Q15075 1411 aa12.15□□□□□ -0.46
PTPDC1-204ENST00000620992 ACIN1Q9UKV3 1341 aaKnown RBP12.15□□□□□ -0.46
PTPDC1-204ENST00000620992 GOLGA3Q08378 1498 aa12.14□□□□□ -0.47
PTPDC1-204ENST00000620992 UNC13AQ9UPW8 1703 aa12.13□□□□□ -0.47
PTPDC1-204ENST00000620992 SLC4A1APQ9BWU0 796 aaKnown RBP12.12□□□□□ -0.47
PTPDC1-204ENST00000620992 GTF3C3Q9Y5Q9 886 aa12.09□□□□□ -0.47
PTPDC1-204ENST00000620992 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
PTPDC1-204ENST00000620992 CLIP1P30622 1438 aa12.07□□□□□ -0.48
PTPDC1-204ENST00000620992 CEP164Q9UPV0 1460 aa12.05□□□□□ -0.48
PTPDC1-204ENST00000620992 P3H3Q8IVL6 736 aa12.03□□□□□ -0.48
PTPDC1-204ENST00000620992 BAZ1BQ9UIG0 1483 aaKnown RBP12.02□□□□□ -0.48
PTPDC1-204ENST00000620992 FAM50AQ14320 339 aaKnown RBP12.02□□□□□ -0.49
PTPDC1-204ENST00000620992 BICRAQ9NZM4 1560 aa12.01□□□□□ -0.49
PTPDC1-204ENST00000620992 SYNJ1O43426 1573 aa12.01□□□□□ -0.49
PTPDC1-204ENST00000620992 PLPPR3Q6T4P5 718 aa11.99□□□□□ -0.49
PTPDC1-204ENST00000620992 ATAD2BQ9ULI0 1458 aa11.99□□□□□ -0.49
PTPDC1-204ENST00000620992 RAPGEF2Q9Y4G8 1499 aa11.98□□□□□ -0.49
PTPDC1-204ENST00000620992 VPS8Q8N3P4 1428 aa11.96□□□□□ -0.49
PTPDC1-204ENST00000620992 ERICH6Q7L0X2 663 aa11.95□□□□□ -0.5
PTPDC1-204ENST00000620992 ZNF326Q5BKZ1 582 aaKnown RBP11.95□□□□□ -0.5
PTPDC1-204ENST00000620992 MIER1Q8N108 512 aa11.95□□□□□ -0.5
PTPDC1-204ENST00000620992 TRIM52Q96A61 297 aa11.93□□□□□ -0.5
PTPDC1-204ENST00000620992 NEFLP07196 543 aa11.93□□□□□ -0.5
PTPDC1-204ENST00000620992 KIF21BO75037 1637 aa11.91□□□□□ -0.5
PTPDC1-204ENST00000620992 PEG3Q9GZU2 1588 aa11.91□□□□□ -0.5
PTPDC1-204ENST00000620992 KANK4Q5T7N3 995 aaPredicted RBP11.86□□□□□ -0.51
PTPDC1-204ENST00000620992 BCL11AQ9H165 835 aa11.85□□□□□ -0.51
PTPDC1-204ENST00000620992 ZNF777Q9ULD5 760 aaPredicted RBP11.82□□□□□ -0.52
PTPDC1-204ENST00000620992 BCANQ96GW7 911 aa11.81□□□□□ -0.52
PTPDC1-204ENST00000620992 SENP3Q9H4L4 574 aaPredicted RBP11.8□□□□□ -0.52
PTPDC1-204ENST00000620992 TOP2BQ02880 1626 aa11.8□□□□□ -0.52
PTPDC1-204ENST00000620992 KIF27Q86VH2 1401 aa11.78□□□□□ -0.52
PTPDC1-204ENST00000620992 SLC24A1O60721 1099 aa11.76□□□□□ -0.53
PTPDC1-204ENST00000620992 DHX57Q6P158 1386 aaKnown RBP11.76□□□□□ -0.53
PTPDC1-204ENST00000620992 ARAP1Q96P48 1450 aa11.75□□□□□ -0.53
PTPDC1-204ENST00000620992 PRXQ9BXM0 1461 aa11.75□□□□□ -0.53
PTPDC1-204ENST00000620992 CUX1P39880 1505 aa11.72□□□□□ -0.53
PTPDC1-204ENST00000620992 ERICH3Q5RHP9 1530 aa11.72□□□□□ -0.53
PTPDC1-204ENST00000620992 CLSPNQ9HAW4 1339 aa11.71□□□□□ -0.53
PTPDC1-204ENST00000620992 CCNB3Q8WWL7 1395 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms