RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
LIMCH1-216ENST00000512820 DCAF8L2P0C7V8 631 aa14.31□□□□□ -0.12
LIMCH1-216ENST00000512820 SUPT5HO00267 1087 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-216ENST00000512820 SHROOM4Q9ULL8 1493 aa14.12□□□□□ -0.15
LIMCH1-216ENST00000512820 PCGF6Q9BYE7 350 aa13.56□□□□□ -0.24
LIMCH1-216ENST00000512820 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
LIMCH1-216ENST00000512820 FAM9AQ8IZU1 332 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-216ENST00000512820 HRCP23327 699 aa13.28□□□□□ -0.28
LIMCH1-216ENST00000512820 CHIC1Q5VXU3 224 aa13.26□□□□□ -0.29
LIMCH1-216ENST00000512820 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
LIMCH1-216ENST00000512820 ZEB1P37275 1124 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-216ENST00000512820 LOC105371045A0A1W2PR82 267 aa13.09□□□□□ -0.31
LIMCH1-216ENST00000512820 TRIM26Q12899 539 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-216ENST00000512820 PPARGC1BQ86YN6 1023 aaKnown RBP13.02□□□□□ -0.32
LIMCH1-216ENST00000512820 TTBK1Q5TCY1 1321 aaPredicted RBP13□□□□□ -0.33
LIMCH1-216ENST00000512820 CCER1Q8TC90 406 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-216ENST00000512820 APLP2Q06481 763 aa12.89□□□□□ -0.35
LIMCH1-216ENST00000512820 PELP1Q8IZL8 1130 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-216ENST00000512820 CENPBP07199 599 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-216ENST00000512820 ZCCHC6Q5VYS8 1495 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-216ENST00000512820 UBTFP17480 764 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-216ENST00000512820 RANGAP1P46060 587 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-216ENST00000512820 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
LIMCH1-216ENST00000512820 YTHDC1Q96MU7 727 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-216ENST00000512820 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-216ENST00000512820 DCAF1Q9Y4B6 1507 aa12.61□□□□□ -0.39
LIMCH1-216ENST00000512820 DIEXFQ68CQ4 756 aaKnown RBP12.52□□□□□ -0.41
LIMCH1-216ENST00000512820 CCDC180Q9P1Z9 1646 aa12.51□□□□□ -0.41
LIMCH1-216ENST00000512820 HNRNPUL2Q1KMD3 747 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-216ENST00000512820 MYT1Q01538 1121 aa12.46□□□□□ -0.42
LIMCH1-216ENST00000512820 ABCC9O60706 1549 aa12.4□□□□□ -0.42
LIMCH1-216ENST00000512820 ATP1B4Q9UN42 357 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-216ENST00000512820 GTF3C3Q9Y5Q9 886 aa12.37□□□□□ -0.43
LIMCH1-216ENST00000512820 ACIN1Q9UKV3 1341 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-216ENST00000512820 SCRIBQ14160 1630 aa12.34□□□□□ -0.43
LIMCH1-216ENST00000512820 ITGAEP38570 1179 aa12.31□□□□□ -0.44
LIMCH1-216ENST00000512820 ZNF316A6NFI3 1004 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-216ENST00000512820 RSF1Q96T23 1441 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-216ENST00000512820 NEFLP07196 543 aa12.28□□□□□ -0.44
LIMCH1-216ENST00000512820 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
LIMCH1-216ENST00000512820 SCAF1Q9H7N4 1312 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-216ENST00000512820 PABPN1Q86U42 306 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMCH1-216ENST00000512820 ERICH6Q7L0X2 663 aa12.19□□□□□ -0.46
LIMCH1-216ENST00000512820 NEUROD1Q13562 356 aa12.18□□□□□ -0.46
LIMCH1-216ENST00000512820 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
LIMCH1-216ENST00000512820 FAM50AQ14320 339 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-216ENST00000512820 CEP162Q5TB80 1403 aa12.01□□□□□ -0.49
LIMCH1-216ENST00000512820 MIER1Q8N108 512 aa11.99□□□□□ -0.49
LIMCH1-216ENST00000512820 BCANQ96GW7 911 aa11.99□□□□□ -0.49
LIMCH1-216ENST00000512820 CECR2Q9BXF3 1484 aa11.98□□□□□ -0.49
LIMCH1-216ENST00000512820 TNIKQ9UKE5 1360 aa11.94□□□□□ -0.5
LIMCH1-216ENST00000512820 EEA1Q15075 1411 aa11.93□□□□□ -0.5
LIMCH1-216ENST00000512820 CLIP1P30622 1438 aa11.92□□□□□ -0.5
LIMCH1-216ENST00000512820 NACADO15069 1562 aa11.92□□□□□ -0.5
LIMCH1-216ENST00000512820 ANP32CO43423 234 aa11.91□□□□□ -0.5
LIMCH1-216ENST00000512820 GOLGA3Q08378 1498 aa11.9□□□□□ -0.5
LIMCH1-216ENST00000512820 POLR3GLQ9BT43 218 aa11.89□□□□□ -0.51
LIMCH1-216ENST00000512820 CLSPNQ9HAW4 1339 aa11.89□□□□□ -0.51
LIMCH1-216ENST00000512820 MROH2BQ7Z745 1585 aa11.87□□□□□ -0.51
LIMCH1-216ENST00000512820 CNGB1Q14028 1251 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-216ENST00000512820 P3H3Q8IVL6 736 aa11.86□□□□□ -0.51
LIMCH1-216ENST00000512820 WRNQ14191 1432 aaPredicted RBP eCLIP11.84□□□□□ -0.51
LIMCH1-216ENST00000512820 SOGA1O94964 1423 aa11.84□□□□□ -0.51
LIMCH1-216ENST00000512820 TRIM52Q96A61 297 aa11.84□□□□□ -0.51
LIMCH1-216ENST00000512820 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-216ENST00000512820 DDX10Q13206 875 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-216ENST00000512820 FKBP8Q14318 412 aa11.8□□□□□ -0.52
LIMCH1-216ENST00000512820 CEP164Q9UPV0 1460 aa11.79□□□□□ -0.52
LIMCH1-216ENST00000512820 CCDC88BA6NC98 1476 aa11.77□□□□□ -0.52
LIMCH1-216ENST00000512820 CDK11AQ9UQ88 783 aaPredicted RBP11.76□□□□□ -0.53
LIMCH1-216ENST00000512820 ABCC8Q09428 1581 aa11.76□□□□□ -0.53
LIMCH1-216ENST00000512820 WIZO95785 1651 aa11.72□□□□□ -0.53
LIMCH1-216ENST00000512820 TONSLQ96HA7 1378 aa11.71□□□□□ -0.54
LIMCH1-216ENST00000512820 HIRIP3Q9BW71 556 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-216ENST00000512820 HNRNPUQ00839 825 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMCH1-216ENST00000512820 VPS8Q8N3P4 1428 aa11.66□□□□□ -0.54
LIMCH1-216ENST00000512820 BAZ1BQ9UIG0 1483 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-216ENST00000512820 ZNF326Q5BKZ1 582 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-216ENST00000512820 DAXXQ9UER7 740 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-216ENST00000512820 ARID3CA6NKF2 412 aa11.63□□□□□ -0.55
LIMCH1-216ENST00000512820 RTL5Q5HYW3 569 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-216ENST00000512820 SUPT16HQ9Y5B9 1047 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-216ENST00000512820 TOP2AP11388 1531 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-216ENST00000512820 KIF27Q86VH2 1401 aa11.61□□□□□ -0.55
LIMCH1-216ENST00000512820 CCNB3Q8WWL7 1395 aa11.59□□□□□ -0.55
LIMCH1-216ENST00000512820 KANK4Q5T7N3 995 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-216ENST00000512820 RUSC2Q8N2Y8 1516 aa11.58□□□□□ -0.56
LIMCH1-216ENST00000512820 SIN3AQ96ST3 1273 aa11.58□□□□□ -0.56
LIMCH1-216ENST00000512820 CHIC2Q9UKJ5 165 aa11.57□□□□□ -0.56
LIMCH1-216ENST00000512820 FAM9BQ8IZU0 186 aa11.57□□□□□ -0.56
LIMCH1-216ENST00000512820 MTUS2Q5JR59 1369 aa11.56□□□□□ -0.56
LIMCH1-216ENST00000512820 IRX6P78412 446 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-216ENST00000512820 ANP32EQ9BTT0 268 aa11.53□□□□□ -0.56
LIMCH1-216ENST00000512820 MYT1LQ9UL68 1186 aa11.5□□□□□ -0.57
LIMCH1-216ENST00000512820 MRS2Q9HD23 443 aa11.5□□□□□ -0.57
LIMCH1-216ENST00000512820 RAPGEF2Q9Y4G8 1499 aa11.5□□□□□ -0.57
LIMCH1-216ENST00000512820 ZNF777Q9ULD5 760 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-216ENST00000512820 ANP32AP39687 249 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-216ENST00000512820 RRP7BPQ9NSQ0 103 aa11.49□□□□□ -0.57
LIMCH1-216ENST00000512820 EIF4G2P78344 907 aaKnown RBP eCLIP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms