Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 AC104581.1-202ENST00000635932 2618 ntBASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ZNF540Q8NDQ6 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 KRT18P20-201ENST00000548986 1279 ntBASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ZNF540Q8NDQ6 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 NCF1B-203ENST00000435988 1254 ntBASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 AP001160.3-201ENST00000601484 763 ntBASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 AL109923.1-201ENST00000618799 583 ntBASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 AC018470.1-201ENST00000624790 3129 ntBASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ZNF540Q8NDQ6 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 AC079598.2-202ENST00000546624 1451 ntBASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 GPX1P1-201ENST00000388829 606 ntBASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 CROCCP5-201ENST00000436658 830 ntBASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms